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Report for CCDS43393.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43393.1 Public Homo sapiens 5 FABP6 24 110 108 CCDS HistoryNCBI Gene:2172Re-query CCDS DB by CCDS ID:43393.1Re-query CCDS DB by GeneID:2172See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43393.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393980.8 ENSP00000377549.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393980.8Link to Ensembl Protein Viewer:ENSP00000377549.4Re-query CCDS DB by Nucleotide ID:ENST00000393980Re-query CCDS DB by Protein ID:ENSP00000377549
Original member Current member NCBI NM_001040442.1 NP_001035532.1 Accepted alive Link to Nucleotide Sequence:NM_001040442.1Link to Protein Sequence:NP_001035532.1Re-query CCDS DB by Nucleotide ID:NM_001040442Re-query CCDS DB by Protein ID:NP_001035532Link to BLAST:NP_001035532.1
Original member Current member NCBI NM_001130958.2 NP_001124430.1 Accepted alive Link to Nucleotide Sequence:NM_001130958.2Link to Protein Sequence:NP_001124430.1Re-query CCDS DB by Nucleotide ID:NM_001130958Re-query CCDS DB by Protein ID:NP_001124430Link to BLAST:NP_001124430.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035532.1 177 P51161-2 177 100% 0 0
NP_001124430.1 177 P51161-2 177 100% 0 0

Chromosomal Locations for CCDS 43393.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 160199107 160199157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160213736 160213819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160229546 160229624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160232098 160232273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160234820 160234909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 160238606 160238659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGAAGACAGTGACGATGATGATGGTGGTGGAGATGCAGGCGCTGACTCAGGTTCTGAGAGCTGTGTTGT
CTGCGTGCACATGGGTGAGCCGGAAAGGAGACCTGCAGAGAATGAAACAGACACATAAAGGAAAGCCTCC
CAGCAGCATGGCTTTCACCGGCAAGTTCGAGATGGAGAGTGAGAAGAATTATGATGAGTTCATGAAGCTC
CTTGGGATCTCCAGCGATGTAATCGAAAAGGCCCGCAACTTCAAGATCGTCACGGAGGTGCAGCAGGATG
GGCAGGACTTCACTTGGTCCCAGCACTACTCCGGGGGCCACACCATGACCAACAAGTTCACTGTTGGCAA
GGAAAGCAACATACAGACAATGGGGGGCAAGACGTTCAAGGCCACTGTGCAGATGGAGGGCGGGAAGCTG
GTGGTGAATTTCCCCAACTATCACCAGACCTCAGAGATCGTGGGTGACAAGCTGGTGGAGGTCTCCACCA
TCGGAGGCGTGACCTATGAGCGCGTGAGCAAGAGACTGGCCTAA

Translation (177 aa):
MKTVTMMMVVEMQALTQVLRAVLSACTWVSRKGDLQRMKQTHKGKPPSSMAFTGKFEMESEKNYDEFMKL
LGISSDVIEKARNFKIVTEVQQDGQDFTWSQHYSGGHTMTNKFTVGKESNIQTMGGKTFKATVQMEGGKL
VVNFPNYHQTSEIVGDKLVEVSTIGGVTYERVSKRLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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