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Report for CCDS43385.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43385.1 Public Homo sapiens 5 ARHGEF37 24 110 108 CCDS HistoryNCBI Gene:389337Re-query CCDS DB by CCDS ID:43385.1Re-query CCDS DB by GeneID:389337See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43385.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333677.7 ENSP00000328083.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333677.7Link to Ensembl Protein Viewer:ENSP00000328083.6Re-query CCDS DB by Nucleotide ID:ENST00000333677Re-query CCDS DB by Protein ID:ENSP00000328083
Original member Current member NCBI NM_001001669.3 NP_001001669.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001669.3Link to Protein Sequence:NP_001001669.2Re-query CCDS DB by Nucleotide ID:NM_001001669Re-query CCDS DB by Protein ID:NP_001001669Link to BLAST:NP_001001669.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001669.2 675 A1IGU5 675 100% 0 0

Chromosomal Locations for CCDS 43385.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 149597770 149597955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149601108 149601231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149609548 149609695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149616567 149616766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149618176 149618306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149618938 149619042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149620354 149620464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149621733 149622062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149624012 149624140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149627076 149627271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149628809 149628966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 149631982 149632191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2028 nt):
ATGGCCAAGCATGGAGCCGACGAGCCATCCTCCAGGTCAGGGAGTCCGGACAGGGAAGGTAGGGCCTCTG
AGGACAGATCGCTGCTTCATCAGAGGCTGGCTGTCCGGGAGCTCATCGACACTGAGGTCTCCTACTTGCA
CATGCTCCAGCTCTGTGCCTCTGACATCAGGAGCCGCCTCCAGCAGTTGCCGCAGGGAGATCTGGATGTC
CTGTTCTCAAACATTGATGATATCATCAAAGTGAACAGCAGATTCCTCCATGATCTGCAGGAGACAGCCT
CCAAGGAAGAGGAACAAGTGCAGCTAGTTGGTAACATATTTCTGGAATTCCAAGAGGAGTTGGAGCAAGT
CTATAAGGTCTACTGTGCCAGCTACGACCAGGCCTTGCTACTGGTGGACACGTACCGGAAGGAGCCGGAG
CTGCAGCGGCACATCCAGGGCATCGTTGAGGCGGTGGTGCCGCAAGCTGGATCTTCAGGCCTCAGTTTCT
TGCTGGTAATTCCTCTGCAGAGGATCACCAGGTACCCACTGCTGCTGCAGAAAATCCTGGAGAACACAGT
CCCTGATGCCAGTGCCTATCCTGTCCTTCAGAGGGCTGTCTCTGCCCTCCAGGACGTGAACACCAATATC
AATGAGTACAAGATGCGCAAGGAAGTGGCCTCCAAGTACACCAAGGTAGAGCAGCTGACCCTCCGGGAGC
GGCTGGCCCGCATCAACACACACACCCTCTCCAAGAAGACCACCCGGCTGAGCCAGCTGCTGAAGCAGGA
GGCGGGGCTGATCCCCAGGACAGAAGACAAGGAATTTGATGATTTAGAAGAGAGGTTCCAGTGGGTGTCT
CTGTGTGTGACTGAGCTGAAGAACAACGTGGCTGCTTACCTGGACAATCTGCAGGCTTTCCTCTACTTCA
GGCCGCACGAATACAATCTGGACATCCCCGAGGGGCCTGCAGTGCAGTATTGCAATTTGGCAAGAGACCT
TCACCTTGAGGCCTTCCTGAAATTTAAGCAACGGCTAGAAGGCCTGGTGTGGCAGCCACTGTGCAGCCTG
GCCAAAGCCCTGCTTGGCCCTCAGAACCTGATCAAGAAGCGTCTGGACAAGCTACTGGACTTTGAGCGGG
TGGAAGAGAAGCTGCTGGAGGTGGGCAGTGTGACCTACCAGGAGGAGGCCGCCCGGCACACATACCAGGC
ACTCAACTCGCTGCTAGTGGCTGAGCTCCCACAGTTTAACCAGCTGGTCATGCAGTGGCTGGGCCAGATC
ATGTGCACATTCGTGACCCTCCAGAGGGACCTTGCAAAGCAAGTGCTGCAGAGGGCAGAGGGAAGCATGG
CCCAGCTGCCCCACCACCACGTCCCAGAGCCTGCCTTCAGGAAGCTGGTGGAGGACGCACTGGGCCGGAC
GAGTAACCAGCTTCGCTCCTTTCAAGAGACCTTTGAGAAAGTGCAGCCACCTCCCACCACACAACCGCTC
CTTCCAGGGTCTGAACGCCAGGTGCAGGCTCTCCTGAGCAGGTATGGCCCTGGGAAGCTGTACCAGGTGA
CAAGCAACATCAGTGGGACTGGGACTCTGGACCTGACTCTGCCTCGGGGCCAAATCGTGGCCATCCTTCA
AAACAAGGACACCAAAGGCAACAGCGGCCGCTGGCTGGTGGACACCGGGGGACATCGTGGGTATGTGCCG
GCTGGGAAACTACAGCTGTACCATGTGGTCCCCAGTGCAGAGGAGCTCAGAAGGCAGGCGGGGCTGAACA
AAGACCCCCGATGTCTAACACCGGAGCCCAGCCCAGCTCTAGTGCCCTCTATTCCCACCATGAACCAGGT
CATAGCCGCGTACCCTTTTGTGGCCAGAAGCAGCCATGAAGTGAGCCTGCAGGCAGGCCAGCCTGTGACC
ATCCTGGAGGCCCAGGACAAGAAGGGGAACCCTGAGTGGAGCCTGGTGGAAGTGAATGGACAGAGGGGTT
ATGTGCCTTCTGGCTTCTTGGCCAGGGCTCGGAGCCCAGTTCTGTGGGGCTGGAGTCTGCCCTCTTAG

Translation (675 aa):
MAKHGADEPSSRSGSPDREGRASEDRSLLHQRLAVRELIDTEVSYLHMLQLCASDIRSRLQQLPQGDLDV
LFSNIDDIIKVNSRFLHDLQETASKEEEQVQLVGNIFLEFQEELEQVYKVYCASYDQALLLVDTYRKEPE
LQRHIQGIVEAVVPQAGSSGLSFLLVIPLQRITRYPLLLQKILENTVPDASAYPVLQRAVSALQDVNTNI
NEYKMRKEVASKYTKVEQLTLRERLARINTHTLSKKTTRLSQLLKQEAGLIPRTEDKEFDDLEERFQWVS
LCVTELKNNVAAYLDNLQAFLYFRPHEYNLDIPEGPAVQYCNLARDLHLEAFLKFKQRLEGLVWQPLCSL
AKALLGPQNLIKKRLDKLLDFERVEEKLLEVGSVTYQEEAARHTYQALNSLLVAELPQFNQLVMQWLGQI
MCTFVTLQRDLAKQVLQRAEGSMAQLPHHHVPEPAFRKLVEDALGRTSNQLRSFQETFEKVQPPPTTQPL
LPGSERQVQALLSRYGPGKLYQVTSNISGTGTLDLTLPRGQIVAILQNKDTKGNSGRWLVDTGGHRGYVP
AGKLQLYHVVPSAEELRRQAGLNKDPRCLTPEPSPALVPSIPTMNQVIAAYPFVARSSHEVSLQAGQPVT
ILEAQDKKGNPEWSLVEVNGQRGYVPSGFLARARSPVLWGWSLPS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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