NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43361.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43361.1 Public Homo sapiens 5 SOWAHA 24 110 108 CCDS HistoryNCBI Gene:134548Re-query CCDS DB by CCDS ID:43361.1Re-query CCDS DB by GeneID:134548See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43361.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378693.4 ENSP00000367965.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378693.4Link to Ensembl Protein Viewer:ENSP00000367965.2Re-query CCDS DB by Nucleotide ID:ENST00000378693Re-query CCDS DB by Protein ID:ENSP00000367965
Original member Current member NCBI NM_175873.6 NP_787069.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_175873.6Link to Protein Sequence:NP_787069.4Re-query CCDS DB by Nucleotide ID:NM_175873Re-query CCDS DB by Protein ID:NP_787069Link to BLAST:NP_787069.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_787069.4 549 Q2M3V2 549 100% 0 0

Chromosomal Locations for CCDS 43361.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 132813622 132815271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGGCGCTGGCCGCCGCCGCCGCCGCTGCGGCTGCCGGGGTGAGCCAGGCGGCGGTGCTGGGCTTCCTGC
AGGAGCACGGCGGGAAGGTGCGCAACTCCGAGCTGCTGAGCCGCTTCAAGCCGCTGCTCGATGCCGGCGA
CCCGCGGGGCCGCGCCGCCCGCAGGGACCGCTTCAAGCAGTTCGTCAACAACGTGGCGGTGGTGAAGGAG
CTCGACGGCGTCAAGTTCGTGGTGCTGAGGAAGAAGCCCCGGCCCCCGGAGCCCGAGCCCGCACCCTTCG
GCCCCCCGGGGGCAGCGGCCCAGCCGTCGAAACCCACTTCGACGGTCTTGCCGCGGAGCGCCTCTGCCCC
GGGAGCTCCGCCCTTGGTCCGGGTGCCGCGGCCAGTGGAGCCGCCAGGGGACCTGGGTCTGCCAACAGAG
CCACAGGACACCCCGGGGGGGCCGGCCTCCGAGCCCGCTCAGCCGCCCGGGGAGCGGTCCGCCGACCCAC
CGCTTCCAGCCCTTGAGCTAGCCCAGGCCACCGAGAGACCCTCCGCAGACGCGGCCCCACCGCCTAGGGC
CCCTTCTGAGGCGGCATCGCCCTGCTCTGATCCGCCAGACGCGGAGCCCGGGCCCGGGGCAGCGAAAGGG
CCGCCGCAGCAGAAGCCCTGTATGCTGCCGGTGCGCTGCGTCCCGGCCCCCGCCACGCTCCGCCTCCGGG
CGGAGGAGCCCGGCCTGCGCCGGCAGCTGTCGGAGGAGCCGAGCCCGCGGAGCTCCCCTCTGCTGCTGAG
GCGGCTCTCGGTGGAAGAGTCCGGTCTGGGCCTCGGCCTGGGCCCGGGCCGCTCCCCGCACCTGAGGCGC
CTGTCGCGCGCCGGCCCGCGTCTGCTGAGCCCTGACGCCGAGGAGTTGCCCGCCGCGCCGCCGCCGTCCG
CGGTGCCCCTGGAGCCGTCCGAGCACGAGTGGCTCGTGCGGACTGCCGGGGGCCGCTGGACCCACCAGCT
GCACGGGCTGCTGCTGCGCGACCGCGGCTTGGCGGCCAAGCGCGACTTCATGTCTGGCTTCACGGCCCTG
CATTGGGCCGCCAAGAGCGGCGACGGCGAGATGGCGCTGCAGCTGGTGGAGGTCGCGCGGCGCAGTGGCG
CACCAGTCGACGTGAACGCACGCTCCCACGGCGGCTACACGCCGCTGCACCTGGCTGCACTGCACGGCCA
CGAGGACGCTGCCGTGCTGCTGGTGGTGCGTCTGGGTGCCCAGGTGCACGTGCGTGATCACAGCGGGCGT
CGCGCCTACCAGTACCTGCGGCCCGGCTCCTCGTACGCGCTGCGCCGCCTTCTTGGCGATCCAGGCCTGC
GAGGCACCACGGAGCCAGATGCGACCGGTGGTGGAAGTGGCAGTCTTGCTGCCAGGCGCCCCGTACAGGT
GGCCGCCACCATCCTCAGTTCCACCACCAGTGCATTTCTGGGCGTCCTGGCTGACGACCTCATGCTCCAG
GACCTGGCCCGAGGCTTGAAGAAGTCGAGCTCCTTCAGCAAGTTCTTGAGCGCCTCGCCCATGGCTCCAC
GTAAAAAGACAAAGATCCGCGGTGGTCTGCCAGCCTTCTCAGAAATCTCTCGTCGACCTACTCCGGGGCC
TTTAGCTGGTCTAGTGCCCAGTTTGCCTCCAACAACCTGA

Translation (549 aa):
MALAAAAAAAAAGVSQAAVLGFLQEHGGKVRNSELLSRFKPLLDAGDPRGRAARRDRFKQFVNNVAVVKE
LDGVKFVVLRKKPRPPEPEPAPFGPPGAAAQPSKPTSTVLPRSASAPGAPPLVRVPRPVEPPGDLGLPTE
PQDTPGGPASEPAQPPGERSADPPLPALELAQATERPSADAAPPPRAPSEAASPCSDPPDAEPGPGAAKG
PPQQKPCMLPVRCVPAPATLRLRAEEPGLRRQLSEEPSPRSSPLLLRRLSVEESGLGLGLGPGRSPHLRR
LSRAGPRLLSPDAEELPAAPPPSAVPLEPSEHEWLVRTAGGRWTHQLHGLLLRDRGLAAKRDFMSGFTAL
HWAAKSGDGEMALQLVEVARRSGAPVDVNARSHGGYTPLHLAALHGHEDAAVLLVVRLGAQVHVRDHSGR
RAYQYLRPGSSYALRRLLGDPGLRGTTEPDATGGGSGSLAARRPVQVAATILSSTTSAFLGVLADDLMLQ
DLARGLKKSSSFSKFLSASPMAPRKKTKIRGGLPAFSEISRRPTPGPLAGLVPSLPPTT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH