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Report for CCDS4329.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4329.1 Public Homo sapiens 5 CNOT8 24 110 108 CCDS HistoryNCBI Gene:9337Re-query CCDS DB by CCDS ID:4329.1Re-query CCDS DB by GeneID:9337See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4329.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000285896.11 ENSP00000285896.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000285896.11Link to Ensembl Protein Viewer:ENSP00000285896.6Re-query CCDS DB by Nucleotide ID:ENST00000285896Re-query CCDS DB by Protein ID:ENSP00000285896
Original member Current member EBI ENST00000403027.6 ENSP00000384747.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403027.6Link to Ensembl Protein Viewer:ENSP00000384747.2Re-query CCDS DB by Nucleotide ID:ENST00000403027Re-query CCDS DB by Protein ID:ENSP00000384747
Original member Current member EBI ENST00000517876.5 ENSP00000430493.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000517876.5Link to Ensembl Protein Viewer:ENSP00000430493.1Re-query CCDS DB by Nucleotide ID:ENST00000517876Re-query CCDS DB by Protein ID:ENSP00000430493
Original member Current member NCBI NM_001301073.2 NP_001288002.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001301073.2Link to Protein Sequence:NP_001288002.1Re-query CCDS DB by Nucleotide ID:NM_001301073Re-query CCDS DB by Protein ID:NP_001288002Link to BLAST:NP_001288002.1
Original member Current member NCBI NM_004779.6 NP_004770.4 Accepted alive Link to Nucleotide Sequence:NM_004779.6Link to Protein Sequence:NP_004770.4Re-query CCDS DB by Nucleotide ID:NM_004779Re-query CCDS DB by Protein ID:NP_004770Link to BLAST:NP_004770.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001288002.1 292 Q9UFF9-1 292 100% 0 0
NP_004770.4 292 Q9UFF9-1 292 100% 0 0

Chromosomal Locations for CCDS 4329.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 154863279 154863395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154865192 154865385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154870661 154870822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154871730 154871874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154872541 154872651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 154875290 154875439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGCCTGCAGCACTTGTGGAGAATAGCCAGGTTATCTGTGAAGTGTGGGCCAGTAATCTAGAAGAAGAGA
TGAGGAAGATCCGAGAAATCGTGCTCAGTTACAGTTATATTGCCATGGACACAGAATTTCCAGGTGTTGT
GGTGCGACCAATTGGTGAATTTCGTAGTTCCATAGATTACCAATATCAGCTTCTGCGGTGCAATGTTGAC
CTTTTAAAAATTATCCAGCTGGGCCTTACATTCACAAATGAGAAGGGAGAGTATCCTTCTGGAATCAATA
CTTGGCAGTTCAATTTCAAATTTAACCTTACAGAGGACATGTACTCCCAGGATTCCATAGATCTCCTTGC
TAACTCAGGACTACAGTTTCAGAAGCATGAAGAGGAAGGGATTGACACACTGCACTTTGCAGAGCTGCTT
ATGACATCAGGAGTGGTTCTCTGTGACAATGTCAAATGGCTTTCATTTCATAGTGGCTATGATTTTGGCT
ATATGGTAAAGTTGCTTACAGATTCTCGTTTGCCAGAAGAGGAACATGAATTCTTTCATATTCTGAACCT
TTTCTTCCCATCCATTTATGATGTGAAATACCTGATGAAGAGCTGCAAAAATCTTAAGGGAGGTCTTCAG
GAAGTTGCTGATCAGTTGGATTTGCAGAGGATTGGAAGGCAGCACCAGGCAGGCTCAGACTCACTGCTGA
CAGGAATGGCTTTCTTTAGGATGAAAGAGTTGTTTTTTGAGGACAGCATTGATGATGCCAAGTACTGTGG
GCGGCTCTATGGCTTAGGCACAGGAGTGGCCCAGAAGCAGAATGAGGATGTGGACTCTGCCCAGGAGAAG
ATGAGCATCCTGGCGATTATCAACAACATGCAGCAGTGA

Translation (292 aa):
MPAALVENSQVICEVWASNLEEEMRKIREIVLSYSYIAMDTEFPGVVVRPIGEFRSSIDYQYQLLRCNVD
LLKIIQLGLTFTNEKGEYPSGINTWQFNFKFNLTEDMYSQDSIDLLANSGLQFQKHEEEGIDTLHFAELL
MTSGVVLCDNVKWLSFHSGYDFGYMVKLLTDSRLPEEEHEFFHILNLFFPSIYDVKYLMKSCKNLKGGLQ
EVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLGTGVAQKQNEDVDSAQEK
MSILAIINNMQQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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