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Report for CCDS43255.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43255.1 Public Homo sapiens 4 ADH6 24 110 108 CCDS HistoryNCBI Gene:130Re-query CCDS DB by CCDS ID:43255.1Re-query CCDS DB by GeneID:130See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43255.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394899.6 ENSP00000378359.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394899.6Link to Ensembl Protein Viewer:ENSP00000378359.2Re-query CCDS DB by Nucleotide ID:ENST00000394899Re-query CCDS DB by Protein ID:ENSP00000378359
Original member Current member NCBI NM_001102470.2 NP_001095940.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001102470.2Link to Protein Sequence:NP_001095940.1Re-query CCDS DB by Nucleotide ID:NM_001102470Re-query CCDS DB by Protein ID:NP_001095940Link to BLAST:NP_001095940.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001095940.1 375 P28332-2 375 100% 0 0

Chromosomal Locations for CCDS 43255.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 99204219 99204243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99204925 99205063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99207446 99207581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99208668 99208928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99210082 99210298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99210415 99210502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99213606 99213747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99216161 99216262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 99219135 99219152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1128 nt):
ATGAGTACTACAGGCCAAGTCATCAGATGCAAAGCAGCCATACTCTGGAAGCCTGGTGCACCATTTTCTA
TTGAAGAGGTAGAAGTGGCCCCACCAAAGGCAAAGGAAGTTCGCATAAAGGTTGTGGCCACCGGACTGTG
TGGTACAGAGATGAAAGTGTTGGGGAGTAAACACTTGGACCTCTTGTATCCCACCATCTTGGGCCATGAA
GGGGCTGGAATCGTTGAGAGTATTGGAGAAGGAGTAAGCACAGTGAAACCAGGTGACAAAGTTATCACAC
TCTTTCTGCCACAGTGTGGAGAATGTACCTCTTGCCTGAATTCTGAGGGCAATTTTTGTATACAATTCAA
ACAGTCAAAAACCCAACTGATGTCTGATGGTACCAGCAGGTTTACCTGCAAGGGAAAATCAATATATCAC
TTTGGTAATACCAGCACCTTCTGTGAATACACAGTGATAAAGGAAATCTCAGTTGCCAAGATTGATGCAG
TCGCTCCTCTAGAGAAAGTATGCCTAATTAGCTGTGGCTTTTCCACTGGGTTTGGTGCTGCAATCAATAC
TGCCAAGGTGACTCCAGGTTCTACCTGTGCTGTGTTTGGCCTGGGAGGAGTCGGCTTGTCTGTTGTCATG
GGTTGTAAAGCAGCAGGAGCAGCCAGGATCATTGGAGTGGATGTCAACAAGGAGAAATTTAAGAAGGCAC
AGGAATTGGGTGCTACTGAGTGCCTCAACCCTCAGGACTTAAAGAAACCCATTCAAGAAGTTTTATTTGA
TATGACAGATGCTGGTATAGACTTCTGCTTTGAGGCCATTGGAAATCTGGACGTTCTGGCAGCTGCCCTC
GCCTCCTGCAATGAGAGCTATGGGGTCTGTGTGGTTGTTGGGGTGTTGCCTGCCAGTGTTCAACTCAAAA
TCAGTGGCCAGTTGTTCTTCTCAGGACGTTCTTTGAAGGGTTCTGTTTTTGGAGGCTGGAAGAGCAGACA
GCACATCCCTAAACTGGTTGCTGATTATATGGCAGAGAAGTTGAATCTAGATCCACTAATTACTCATACT
CTGAATCTTGATAAAATCAATGAAGCAGTTGAATTAATGAAAACTGGAAAATGTATCCGCTGTATCCTGT
TACTTTAA

Translation (375 aa):
MSTTGQVIRCKAAILWKPGAPFSIEEVEVAPPKAKEVRIKVVATGLCGTEMKVLGSKHLDLLYPTILGHE
GAGIVESIGEGVSTVKPGDKVITLFLPQCGECTSCLNSEGNFCIQFKQSKTQLMSDGTSRFTCKGKSIYH
FGNTSTFCEYTVIKEISVAKIDAVAPLEKVCLISCGFSTGFGAAINTAKVTPGSTCAVFGLGGVGLSVVM
GCKAAGAARIIGVDVNKEKFKKAQELGATECLNPQDLKKPIQEVLFDMTDAGIDFCFEAIGNLDVLAAAL
ASCNESYGVCVVVGVLPASVQLKISGQLFFSGRSLKGSVFGGWKSRQHIPKLVADYMAEKLNLDPLITHT
LNLDKINEAVELMKTGKCIRCILLL


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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