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Report for CCDS43248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43248.1 Public Homo sapiens 4 DSPP 24 110 108 CCDS HistoryNCBI Gene:1834Re-query CCDS DB by CCDS ID:43248.1Re-query CCDS DB by GeneID:1834See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43248.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000651931.1 ENSP00000498766.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000651931.1Link to Ensembl Protein Viewer:ENSP00000498766.1Re-query CCDS DB by Nucleotide ID:ENST00000651931Re-query CCDS DB by Protein ID:ENSP00000498766
Original member Current member NCBI NM_014208.3 NP_055023.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014208.3Link to Protein Sequence:NP_055023.2Re-query CCDS DB by Nucleotide ID:NM_014208Re-query CCDS DB by Protein ID:NP_055023Link to BLAST:NP_055023.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055023.2 1301 Q9NZW4 1301 100% 0 0

Chromosomal Locations for CCDS 43248.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 87610909 87610959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87612105 87612188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87612322 87613308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 87613785 87616568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3906 nt):
ATGAAGATAATTACATATTTTTGCATTTGGGCAGTAGCATGGGCCATTCCAGTTCCTCAAAGCAAACCAC
TGGAGAGACATGTCGAAAAATCCATGAATTTGCATCTCCTAGCAAGATCAAATGTGTCAGTACAGGATGA
GTTAAATGCCAGTGGAACCATCAAAGAAAGTGGTGTCCTGGTGCATGAAGGTGATAGAGGAAGGCAAGAG
AATACCCAAGATGGTCACAAGGGAGAAGGGAATGGCTCTAAGTGGGCAGAAGTAGGAGGGAAGAGTTTTT
CTACATATTCCACATTAGCAAACGAAGAGGGGAATATTGAGGGCTGGAATGGGGACACAGGAAAAGCAGA
AACATATGGTCATGATGGAATACATGGGAAAGAAGAAAACATCACAGCAAATGGCATCCAGGGACAAGTA
AGCATCATTGACAATGCTGGAGCCACAAACAGAAGCAACACTAATGGAAATACTGATAAGAATACCCAAA
ATGGGGATGTTGGCGATGCAGGTCACAATGAGGATGTCGCTGTTGTCCAAGAAGATGGACCTCAAGTAGC
TGGAAGCAATAACAGTACAGACAATGAGGATGAAATAATTGAGAATTCCTGTAGAAACGAGGGTAATACA
AGTGAAATAACACCTCAGATCAACAGCAAGAGAAATGGGACTAAGGAAGCTGAGGTAACACCAGGCACTG
GAGAAGATGCTGGCCTGGATAATTCCGATGGGAGTCCTAGTGGGAATGGAGCAGATGAGGATGAAGACGA
GGGTTCTGGTGATGATGAAGATGAAGAAGCAGGGAATGGAAAAGACAGTAGTAATAACAGCAAGGGCCAG
GAGGGCCAGGACCATGGGAAAGAAGATGATCATGATAGTAGCATAGGTCAAAATTCAGATAGTAAAGAAT
ATTATGACCCTGAAGGCAAAGAAGATCCCCATAATGAAGTTGATGGAGACAAGACCTCCAAGAGTGAGGA
GAATTCTGCTGGTATTCCAGAAGACAATGGCAGCCAAAGAATAGAGGACACCCAGAAGCTCAACCATAGA
GAAAGCAAACGCGTAGAAAATAGAATCACCAAAGAATCAGAGACACATGCTGTTGGGAAGAGCCAAGATA
AGGGAATAGAAATCAAGGGTCCCAGCAGTGGCAACAGAAATATTACCAAAGAAGTTGGGAAAGGCAACGA
AGGTAAAGAGGATAAAGGACAACATGGAATGATCTTGGGCAAAGGCAATGTCAAGACACAAGGAGAGGTT
GTCAACATAGAAGGACCTGGCCAAAAATCAGAACCAGGAAATAAAGTTGGACACAGCAATACAGGTAGTG
ACAGCAATAGTGATGGATATGACAGTTATGATTTTGATGATAAGTCCATGCAAGGAGATGATCCCAATAG
CAGTGATGAATCTAATGGCAATGATGATGCTAATTCAGAAAGTGACAATAACAGCAGTAGCCGAGGAGAT
GCTTCTTATAACTCTGATGAATCAAAAGATAATGGCAATGGCAGTGACTCAAAAGGAGCAGAAGATGATG
ACAGTGATAGCACATCAGACACTAATAATAGTGACAGTAATGGCAATGGTAACAATGGGAATGATGACAA
TGACAAATCAGACAGTGGCAAAGGTAAATCAGATAGCAGTGACAGTGATAGTAGTGATAGCAGCAATAGC
AGTGATAGTAGTGACAGCAGTGACAGTGACAGCAGTGATAGCAACAGTAGCAGTGATAGTGACAGCAGTG
ACAGTGACAGCAGTGATAGCAGTGACAGTGATAGTAGTGATAGCAGCAATAGCAGTGACAGTAGTGACAG
CAGTGATAGCAGTGACAGTAGTGATAGTAGTGACAGCAGTGACAGCAAGTCAGACAGCAGCAAATCAGAG
AGCGACAGCAGTGATAGTGACAGTAAGTCAGACAGCAGTGACAGCAACAGCAGTGACAGTAGTGACAACA
GTGATAGCAGCGACAGCAGCAATAGCAGTAACAGCAGTGATAGTAGTGACAGCAGTGATAGCAGTGACAG
CAGCAGTAGCAGTGACAGCAGCAACAGCAGTGATAGTAGTGACAGTAGTGACAGCAGCAATAGCAGTGAG
AGCAGTGATAGTAGTGACAGCAGTGATAGTGACAGCAGTGATAGTAGTGACAGCAGTAATAGTAACAGCA
GCGATAGTGACAGCAGCAACAGCAGCGATAGCAGTGACAGCAGCAACAGCAGTGACAGCAGTGATAGCAG
TGACAGCAGCAACAGCAGTGACAGTAGCGATAGCAGTGACAGCAGCAACAGCAGTGACAGCAGTGATAGC
AGTGACAGCAGTGATAGTAGTGACAGCAGCAACAGCAGTGATAGCAACGACAGCAGCAATAGCAGTGACA
GCAGTGATAGCAGCAACAGCAGTGATAGCAGCAACAGCAGTGATAGCAGTGATAGCAGTGACAGCAGTGA
TAGCGACAGCAGCAATAGCAGTGACAGCAGTAATAGTAGTGACAGCAGCGATAGCAGCAACAGCAGTGAT
AGCAGCGACAGCAGCGATAGCAGTGACGGCAGTGATAGCGACAGCAGCAATAGAAGTGACAGTAGTAATA
GTAGTGACAGCAGCGATAGCAGTGACAGCAGCAACAGCAGTGACAGCAGTGATAGCAGTGACAGCAACGA
AAGCAGCAATAGCAGTGACAGCAGTGATAGCAGCAACAGCAGTGATAGTGACAGCAGTGATAGCAGCAAC
AGCAGTGACAGCAGTGATAGCAGCAACAGCAGTGATAGCAGTGAAAGCAGTAATAGTAGTGACAACAGCA
ATAGCAGTGACAGCAGCAACAGCAGTGACAGCAGTGATAGCAGTGACAGCAGTAATAGTAGTGACAGCAG
CAATAGCAGTGACAGCAGCAACAGCAGTGACAGCAGTGATAGCAATAGCAGCGACAGCAGTGACAGCAGC
AACAGCAGCGATAGCAGTGACAGCAGTGATAGCAGTGACAGCAGTGACAGCAGTGATAGCAGCAACAGCA
GTGATAGCAGTGACAGCAGTGACAGCAGTGATAGCAGTAATAGTAGTGACAGCAGCAATAGCAGTGACAG
CAGCAACAGCAGTGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGAC
AGCAGTGACAGCAGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGTGATAGCAGTGACAGCAGTG
ACAGCAGCGACAGCAGTGATAGCAGTGAAAGCAGTGATAGCAGTGACAGCAGCAATAGCAGTGACAGCAG
CGATAGCAGCGACAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCGATAGCAGTGACAGCAGTGACAGC
AGCAATAGCAGTGACAGCAGTGACAGCAGCGACAGCAGTGATAGCAGTGACAGCAGCAACAGCAGTGACA
GCAGTGACAGCAGTGAAAGCAGCGACAGCAGTGACAGCAGCGACAGCAGTGACAGCAGCGATAGCAGCGA
CAGCAGCGACAGCAGCGATAGCAGTGACAGCAGCAATAGCAGTGATAGCAGCGACAGCAGTGATAGCAGT
GACAGCAGCGACAGCAGCGATAGCAGCGACAGCAGCGATAGTAGTGATAGCAGTGACAGCAGTGACAGCA
GCGACAGCAGTGACAGCAGCGACAGCAGTGACAGCAGCGACAGCAGTGACAGCAATGAAAGCAGCGACAG
CAGTGACAGCAGCGATAGCAGTGACAGCAGCAACAGCAGTGACAGCAGCGACAGCAGTGATAGCAGTGAC
AGCACATCTGACAGCAATGATGAGAGTGACAGCCAGAGCAAGTCTGGTAACGGTAACAACAATGGAAGTG
ACAGTGACAGTGACAGTGAAGGCAGTGACAGTAACCACTCAACCAGTGATGATTAG

Translation (1301 aa):
MKIITYFCIWAVAWAIPVPQSKPLERHVEKSMNLHLLARSNVSVQDELNASGTIKESGVLVHEGDRGRQE
NTQDGHKGEGNGSKWAEVGGKSFSTYSTLANEEGNIEGWNGDTGKAETYGHDGIHGKEENITANGIQGQV
SIIDNAGATNRSNTNGNTDKNTQNGDVGDAGHNEDVAVVQEDGPQVAGSNNSTDNEDEIIENSCRNEGNT
SEITPQINSKRNGTKEAEVTPGTGEDAGLDNSDGSPSGNGADEDEDEGSGDDEDEEAGNGKDSSNNSKGQ
EGQDHGKEDDHDSSIGQNSDSKEYYDPEGKEDPHNEVDGDKTSKSEENSAGIPEDNGSQRIEDTQKLNHR
ESKRVENRITKESETHAVGKSQDKGIEIKGPSSGNRNITKEVGKGNEGKEDKGQHGMILGKGNVKTQGEV
VNIEGPGQKSEPGNKVGHSNTGSDSNSDGYDSYDFDDKSMQGDDPNSSDESNGNDDANSESDNNSSSRGD
ASYNSDESKDNGNGSDSKGAEDDDSDSTSDTNNSDSNGNGNNGNDDNDKSDSGKGKSDSSDSDSSDSSNS
SDSSDSSDSDSSDSNSSSDSDSSDSDSSDSSDSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSKSDSSKSE
SDSSDSDSKSDSSDSNSSDSSDNSDSSDSSNSSNSSDSSDSSDSSDSSSSSDSSNSSDSSDSSDSSNSSE
SSDSSDSSDSDSSDSSDSSNSNSSDSDSSNSSDSSDSSNSSDSSDSSDSSNSSDSSDSSDSSNSSDSSDS
SDSSDSSDSSNSSDSNDSSNSSDSSDSSNSSDSSNSSDSSDSSDSSDSDSSNSSDSSNSSDSSDSSNSSD
SSDSSDSSDGSDSDSSNRSDSSNSSDSSDSSDSSNSSDSSDSSDSNESSNSSDSSDSSNSSDSDSSDSSN
SSDSSDSSNSSDSSESSNSSDNSNSSDSSNSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSNSSDSSDSS
NSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSSDSSNSSDSSNSSDSSNSSDSSDSSDSSDSSDSSDSSD
SSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSESSDSSDSSNSSDSSDSSDSSDSSDSSDSSDSSDSSDS
SNSSDSSDSSDSSDSSDSSNSSDSSDSSESSDSSDSSDSSDSSDSSDSSDSSDSSDSSNSSDSSDSSDSS
DSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSSDSNESSDSSDSSDSSDSSNSSDSSDSSDSSD
STSDSNDESDSQSKSGNGNNNGSDSDSDSEGSDSNHSTSDD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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