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Report for CCDS43224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43224.1 Public Homo sapiens 4 APBB2 24 110 108 CCDS HistoryNCBI Gene:323Re-query CCDS DB by CCDS ID:43224.1Re-query CCDS DB by GeneID:323See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43224.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000513140.5 ENSP00000426018.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000513140.5Link to Ensembl Protein Viewer:ENSP00000426018.1Re-query CCDS DB by Nucleotide ID:ENST00000513140Re-query CCDS DB by Protein ID:ENSP00000426018
Original member Current member NCBI NM_173075.5 NP_775098.2 Accepted alive Link to Nucleotide Sequence:NM_173075.5Link to Protein Sequence:NP_775098.2Re-query CCDS DB by Nucleotide ID:NM_173075Re-query CCDS DB by Protein ID:NP_775098Link to BLAST:NP_775098.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775098.2 736 Q92870-2 736 100% 0 0

Chromosomal Locations for CCDS 43224.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 40816092 40816259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40821871 40822050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40823644 40823759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40825887 40825967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40827132 40827219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40830463 40830577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40890364 40890491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40893265 40893411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40934456 40934516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40934614 40934699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 40944865 40945070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41013583 41014398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 41033236 41033254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2211 nt):
ATGTCAGAAGTACTTCCAGCTGACTCAGGTGTTGACACCTTGGCAGTGTTTATGGCCAGCAGCGGAACTA
CAGACGTCACAAATCGGAACAGCCCAGCCACACCACCAAACACCCTTAACCTCCGATCCTCCCACAATGA
ACTGTTGAACGCTGAAATAAAACACACAGAAACCAAGAACAGCACACCTCCCAAATGCAGGAAAAAATAT
GCACTAACTAACATCCAGGCGGCCATGGGCCTCTCGGATCCAGCTGCACAGCCCCTGCTGGGAAATGGCT
CTGCCAACATCAAGCTGGTGAAAAATGGGGAGAACCAGCTCCGTAAGGCTGCAGAGCAAGGGCAGCAGGA
CCCCAACAAAAACCTGAGCCCCACTGCAGTCATCAACATAACTTCTGAGAAGTTAGAGGGTAAAGAGCCC
CACCCACAGGATTCCTCGAGCTGTGAGATTTTACCCTCCCAGCCCAGGAGAACTAAGAGCTTCCTAAATT
ACTATGCAGATCTGGAAACCTCAGCCAGAGAACTAGAGCAGAACCGAGGCAATCACCATGGGACTGCGGA
AGAGAAATCCCAGCCAGTCCAGGGCCAGGCCTCCACCATCATTGGGAATGGCGATTTGCTGCTGCAGAAA
CCAAACAGACCCCAGTCCAGCCCTGAAGACGGCCAAGTAGCCACAGTGTCATCCAGCCCAGAAACCAAGA
AGGATCATCCGAAAACAGGGGCCAAAACCGACTGTGCACTGCACCGGATCCAGAACCTGGCACCGAGCGA
TGAGGAGTCCAGCTGGACAACGTTGTCCCAAGACAGTGCCTCACCCAGCTCCCCGGATGAAACAGATATA
TGGAGTGATCACTCATTTCAGACTGATCCAGATTTGCCGCCTGGCTGGAAAAGAGTCAGTGACATTGCCG
GGACCTATTATTGGCACATCCCAACAGGAACGACTCAGTGGGAACGGCCCGTCTCCATCCCAGCAGATCT
CCAGGGTTCTAGGAAAGGGTCACTTAGTTCTGTAACGCCATCTCCCACCCCAGAGAACGAGGATTTGCAT
GCAGCCACTGTTAACCCGGACCCCAGTTTAAAAGAGTTTGAAGGAGCAACCCTACGCTATGCATCTTTGA
AACTCAGAAATGCCCCACACCCTGATGATGATGATTCTTGTAGTATCAACAGTGACCCAGAAGCCAAGTG
TTTTGCTGTGCGTTCTCTGGGATGGGTAGAGATGGCAGAAGAGGACCTCGCCCCCGGTAAAAGTAGTGTT
GCGGTCAACAACTGCATCAGGCAACTTTCCTACTGCAAAAATGACATCCGAGACACAGTCGGGATTTGGG
GAGAGGGGAAAGACATGTACCTGATCCTGGAGAATGACATGCTCAGCCTGGTGGACCCCATGGACCGCAG
CGTGCTGCACTCGCAGCCCATCGTCAGCATCCGCGTGTGGGGCGTGGGCCGCGACAATGGCCGGGATTTT
GCTTATGTAGCAAGAGATAAAGATACAAGAATTTTGAAATGTCATGTATTTCGATGTGACACACCAGCAA
AAGCCATTGCCACAAGTCTCCACGAGATCTGCTCCAAGATTATGGCTGAACGGAAGAATGCCAAAGCGCT
GGCCTGCAGCTCCTTACAGGAAAGGGCCAATGTGAACCTCGATGTCCCTTTGCAAGATTTTCCAACACCA
AAGACTGAGCTGGTCCAGAAGTTCCACGTGCAGTACTTGGGCATGTTACCTGTAGACAAACCAGTCGGAA
TGGATATTTTGAACAGTGCCATAGAAAATCTTATGACCTCATCCAACAAGGAGGACTGGCTGTCAGTGAA
CATGAACGTGGCTGATGCCACTGTGACTGTCATCAGTGAAAAGAATGAAGAGGAAGTCTTAGTGGAATGT
CGTGTGCGATTCCTGTCCTTCATGGGTGTTGGGAAGGACGTCCACACATTTGCCTTCATCATGGACACGG
GGAACCAGCGCTTTGAGTGCCACGTTTTCTGGTGCGAGCCTAATGCTGGTAACGTGTCTGAGGCGGTGCA
GGCCGCCTGCATGTTACGATATCAGAAGTGCTTGGTAGCCAGGCCGCCTTCTCAGAAAGTTCGACCACCT
CCACCGCCAGCAGATTCAGTAACCAGAAGAGTCACAACCAATGTAAAACGAGGGGTCTTATCCCTCATTG
ACACTTTGAAACAGAAACGCCCTGTCACCGAAATGCCATAG

Translation (736 aa):
MSEVLPADSGVDTLAVFMASSGTTDVTNRNSPATPPNTLNLRSSHNELLNAEIKHTETKNSTPPKCRKKY
ALTNIQAAMGLSDPAAQPLLGNGSANIKLVKNGENQLRKAAEQGQQDPNKNLSPTAVINITSEKLEGKEP
HPQDSSSCEILPSQPRRTKSFLNYYADLETSARELEQNRGNHHGTAEEKSQPVQGQASTIIGNGDLLLQK
PNRPQSSPEDGQVATVSSSPETKKDHPKTGAKTDCALHRIQNLAPSDEESSWTTLSQDSASPSSPDETDI
WSDHSFQTDPDLPPGWKRVSDIAGTYYWHIPTGTTQWERPVSIPADLQGSRKGSLSSVTPSPTPENEDLH
AATVNPDPSLKEFEGATLRYASLKLRNAPHPDDDDSCSINSDPEAKCFAVRSLGWVEMAEEDLAPGKSSV
AVNNCIRQLSYCKNDIRDTVGIWGEGKDMYLILENDMLSLVDPMDRSVLHSQPIVSIRVWGVGRDNGRDF
AYVARDKDTRILKCHVFRCDTPAKAIATSLHEICSKIMAERKNAKALACSSLQERANVNLDVPLQDFPTP
KTELVQKFHVQYLGMLPVDKPVGMDILNSAIENLMTSSNKEDWLSVNMNVADATVTVISEKNEEEVLVEC
RVRFLSFMGVGKDVHTFAFIMDTGNQRFECHVFWCEPNAGNVSEAVQAACMLRYQKCLVARPPSQKVRPP
PPPADSVTRRVTTNVKRGVLSLIDTLKQKRPVTEMP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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