NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43129.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43129.2 Public Homo sapiens 3 TMPRSS7 24 110 108 CCDS HistoryNCBI Gene:344805Re-query CCDS DB by CCDS ID:43129.2Re-query CCDS DB by GeneID:344805See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 43129.1
The coding region has been updated to represent an alternative splice pattern that is more supported by the available transcript and conservation data. The update extends a CUB domain and adds a SEA domain to the protein.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 43129.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000419127.5 ENSP00000411645.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000419127.5Link to Ensembl Protein Viewer:ENSP00000411645.1Re-query CCDS DB by Nucleotide ID:ENST00000419127Re-query CCDS DB by Protein ID:ENSP00000411645
Original member Current member EBI ENST00000617607.4 ENSP00000478830.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617607.4Link to Ensembl Protein Viewer:ENSP00000478830.1Re-query CCDS DB by Nucleotide ID:ENST00000617607Re-query CCDS DB by Protein ID:ENSP00000478830
Original member Current member NCBI NM_001042575.2 NP_001036040.2 Accepted alive Link to Nucleotide Sequence:NM_001042575.2Link to Protein Sequence:NP_001036040.2Re-query CCDS DB by Nucleotide ID:NM_001042575Re-query CCDS DB by Protein ID:NP_001036040Link to BLAST:NP_001036040.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001036040.2 717 Q7RTY8-2 717 100% 0 0

Chromosomal Locations for CCDS 43129.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 112041958 112042050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112044255 112044322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112045753 112045943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112047739 112047967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112049844 112049974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112050671 112050783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112057025 112057131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112061787 112061923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112063525 112063632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112066392 112066502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112074296 112074412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112075321 112075492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112076876 112077144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112078742 112078878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 112080914 112081084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2154 nt):
ATGTTTCGCATCACCAACATTGAGTTTCTTCCCGAATACCGACAAAAGGAGTCCAGGGAATTTCTTTCAG
TGTCACGGACTGTGCAGCAAGTGATAAACCTGGTTTATACAACATCTGCCTTCTCCAAATTTTATGAGCA
GTCTGTTGTTGCAGATGTCAGCAACAACAAAGGCGGCCTCCTTGTCCACTTTTGGATTGTTTTTGTCATG
CCACGTGCCAAAGGCCACATCTTCTGTGAAGACTGTGTTGCCGCCATCTTGAAGGACTCCATCCAGACAA
GCATCATAAACCGGACCTCTGTGGGGAGCTTGCAGGGACTGGCTGTGGACATGGACTCTGTGGTACTAAA
TGACAAAGGCTGCTCTCAGTACTTCTATGCAGAGCATCTGTCTCTCCACTACCCGCTGGAGATTTCTGCA
GCCTCAGGGAGGCTGATGTGTCACTTCAAGCTGGTGGCCATAGTGGGCTACCTGATTCGTCTCTCAATCA
AGTCCATCCAAATCGAAGCCGACAACTGTGTCACTGACTCCCTGACCATTTACGACTCCCTTTTGCCCAT
CCGGAGCAGCATCTTGTACAGAATTTGTGAACCCACAAGAACATTAATGTCATTTGTTTCTACAAATAAT
CTCATGTTGGTGACATTTAAGTCTCCTCATATACGGAGGCTCTCAGGAATCCGGGCATATTTTGAGGTCA
TTCCAGAACAAAAGTGTGAAAACACAGTGTTGGTCAAAGACATCACTGGCTTTGAAGGGAAAATTTCAAG
CCCATATTACCCGAGCTACTATCCTCCAAAATGCAAGTGTACCTGGAAATTTCAGACTTCTCTATCAACT
CTTGGCATAGCACTGAAATTCTATAACTATTCAATAACCAAGAAGAGTATGAAAGGCTGTGAGCATGGAT
GGTGGGAAATTAATGAGCACATGTACTGTGGCTCCTACATGGATCATCAGACAATTTTTCGAGTGCCCAG
CCCTCTGGTTCACATTCAGCTCCAGTGCAGTTCAAGGCTTTCAGACAAGCCACTTTTGGCAGAATATGGC
AGTTACAACATCAGTCAACCCTGCCCTGTTGGATCTTTTAGATGCTCCTCCGGTTTATGTGTCCCTCAGG
CCCAGCGTTGTGATGGAGTAAATGACTGCTTTGATGAAAGTGATGAACTGTTTTGCGTGAGCCCTCAACC
TGCCTGCAATACCAGCTCCTTCAGGCAGCATGGCCCTCTCATCTGTGATGGCTTCAGGGACTGTGAGAAT
GGCCGGGATGAGCAAAACTGCACTCAAAGTATTCCATGCAACAACAGAACTTTTAAGTGTGGCAATGATA
TTTGCTTTAGGAAACAAAATGCAAAATGTGATGGGACAGTGGATTGTCCAGATGGAAGTGATGAAGAAGG
CTGCACCTGCAGCAGGAGTTCCTCCGCCCTTCACCGCATCATCGGAGGCACAGACACCCTGGAGGGGGGT
TGGCCGTGGCAGGTCAGCCTCCACTTTGTTGGATCTGCCTACTGTGGTGCCTCAGTCATCTCCAGGGAGT
GGCTTCTTTCTGCAGCCCACTGTTTTCATGGAAACAGGCTGTCAGATCCCACACCATGGACTGCACACCT
CGGGATGTATGTTCAGGGGAATGCCAAGTTTGTCTCCCCGGTGAGAAGAATTGTGGTCCACGAGTACTAT
AACAGTCAGACTTTTGATTATGATATTGCTTTGCTACAGCTCAGTATTGCCTGGCCTGAGACCCTGAAAC
AGCTCATTCAGCCAATATGCATTCCTCCCACTGGTCAGAGAGTTCGCAGTGGGGAGAAGTGCTGGGTAAC
TGGCTGGGGGCGAAGACACGAAGCAGATAATAAAGGCTCCCTCGTTCTGCAGCAAGCGGAGGTAGAGCTC
ATTGATCAAACGCTCTGTGTTTCCACCTACGGGATCATCACTTCTCGGATGCTCTGTGCAGGCATAATGT
CAGGCAAGAGAGATGCCTGCAAAGGAGATTCGGGTGGACCTTTATCTTGTCGAAGAAAAAGTGATGGAAA
ATGGATTTTGACTGGCATTGTTAGCTGGGGACATGGAAGTGGACGACCAAACTTTCCTGGTGTTTACACA
AGGGTGTCAAACTTTGTTCCCTGGATTCATAAATATGTCCCTTCTCTTTTGTAA

Translation (717 aa):
MFRITNIEFLPEYRQKESREFLSVSRTVQQVINLVYTTSAFSKFYEQSVVADVSNNKGGLLVHFWIVFVM
PRAKGHIFCEDCVAAILKDSIQTSIINRTSVGSLQGLAVDMDSVVLNDKGCSQYFYAEHLSLHYPLEISA
ASGRLMCHFKLVAIVGYLIRLSIKSIQIEADNCVTDSLTIYDSLLPIRSSILYRICEPTRTLMSFVSTNN
LMLVTFKSPHIRRLSGIRAYFEVIPEQKCENTVLVKDITGFEGKISSPYYPSYYPPKCKCTWKFQTSLST
LGIALKFYNYSITKKSMKGCEHGWWEINEHMYCGSYMDHQTIFRVPSPLVHIQLQCSSRLSDKPLLAEYG
SYNISQPCPVGSFRCSSGLCVPQAQRCDGVNDCFDESDELFCVSPQPACNTSSFRQHGPLICDGFRDCEN
GRDEQNCTQSIPCNNRTFKCGNDICFRKQNAKCDGTVDCPDGSDEEGCTCSRSSSALHRIIGGTDTLEGG
WPWQVSLHFVGSAYCGASVISREWLLSAAHCFHGNRLSDPTPWTAHLGMYVQGNAKFVSPVRRIVVHEYY
NSQTFDYDIALLQLSIAWPETLKQLIQPICIPPTGQRVRSGEKCWVTGWGRRHEADNKGSLVLQQAEVEL
IDQTLCVSTYGIITSRMLCAGIMSGKRDACKGDSGGPLSCRRKSDGKWILTGIVSWGHGSGRPNFPGVYT
RVSNFVPWIHKYVPSLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH