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Report for CCDS43068.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43068.2 Public Homo sapiens 3 TTC21A 24 110 108 CCDS HistoryNCBI Gene:199223Re-query CCDS DB by CCDS ID:43068.2Re-query CCDS DB by GeneID:199223See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 43068.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript and protein data.

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 43068.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000440121.1 ENSP00000410882.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440121.1Link to Ensembl Protein Viewer:ENSP00000410882.1Re-query CCDS DB by Nucleotide ID:ENST00000440121Re-query CCDS DB by Protein ID:ENSP00000410882
Original member Current member NCBI NM_001105513.3 NP_001098983.2 Accepted alive Link to Nucleotide Sequence:NM_001105513.3Link to Protein Sequence:NP_001098983.2Re-query CCDS DB by Nucleotide ID:NM_001105513Re-query CCDS DB by Protein ID:NP_001098983Link to BLAST:NP_001098983.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098983.2 1272 Q8NDW8-6 1272 100% 0 0

Chromosomal Locations for CCDS 43068.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 39107838 39107864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39109085 39109214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39110029 39110139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39110851 39111017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39114585 39114742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39118069 39118153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39119922 39120020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39120997 39121189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39125063 39125160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39125332 39125532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39126261 39126390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39128331 39128488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39128717 39128932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39129072 39129310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39130079 39130151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39130248 39130358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39130701 39130839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39130992 39131095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39133052 39133240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39134218 39134328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39135093 39135174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39136357 39136507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39136899 39137060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39137195 39137387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39137486 39137710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39138267 39138387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39138556 39138623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39138711 39138788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3819 nt):
ATGAGCAGCAATGACTCCTCCCTTATGGCTGGGATCATTTACTATAGCCAGGAAAAGTACTTCCACCATG
TGCAGCAGGCTGCAGCTGTGGGCCTGGAAAAATTCAGCAATGACCCTGTGTTGAAGTTCTTTAAAGCCTA
TGGAGTCCTCAAAGAAGAGCACATCCAGGATGCCATCAGTGACCTGGAAAGCATCAGGCATCACCCAGAC
GTGTCCCTGTGCTCCACCATGGCCCTCATTTATGCTCACAAAAGATGTGAAATCATTGACCGAGAAGCAA
TTCAGGAGCTTGAGTACAGCCTGAAGGAAATACGCAAGACAGTCAGTGGGACTGCACTGTACTATGCTGG
CCTTTTCCTCTGGCTCATAGGCCGCCATGACAAGGCCAAAGAGTACATTGACCGCATGCTGAAGATTTCT
AGAGGCTTCAGAGAGGCAATGTACTTCATGATGCAGCAGAACTACTCAGAGGCCCTGGAGGTGGTGAACC
AGATCACTGTGACTTCAGGGAGCTTCCTGCCAGCCCTCGTCCTGAAGATGCAGCTGTTCTTAGCTCGGCA
GGACTGGGAGCAGACAGTAGAAATGGGACACAGAATCCTAGAAAAAGATGAGAGCAATATTGATGCCTGC
CAAATTCTAACCGTGCATGAGCTTGCAAGAGAAGGAAACATGACCACAGCTACCAATCACGTTAGAAATC
TGATTAAGGCACTAGAGACAAGGGAACCCGAAAATCCAAGCCTCCATCTTAAAAAAATTATTGTGGTTAG
CCGACTGTGTGGGAGTCACCAGGTGATTCTAGGGCTAGTGTGTAGTTTCATCGAGCGCACCTTCATGGCC
ACCCCCTCGTATGTCCATGTGGCCACAGAACTGGGCTATCTCTTCATCCTGAAGAACCAAGTGAAAGAGG
CCTTGCTGTGGTATTCAGAAGCCATGAAACTGGACAAGGATGGCATGGCTGGTTTGACAGGGATCATCTT
GTGTCATATCTTAGAAGGCCACCTGGAGGAAGCTGAGTACCGGCTGGAATTCCTGAAGGAGGTGCAGAAG
TCCCTTGGGAAGTCTGAGGTGCTAATTTTCCTCCAAGCCCTCCTGATGTCCAGGAAGCACAAGGGGGAGG
AAGAGACCACAGCGCTCCTGAAGGAGGCAGTGGAGCTTCACTTCTCCAGCATGCAAGGCATCCCTCTTGG
CTCTGAGTACTTTGAAAAGCTGGACCCGTACTTCCTGGTCTGCATTGCTAAGGAGTACTTGCTCTTCTGC
CCCAAGCAGCCCAGGTTACCAGGCCAGATCGTGTCTCCACTTCTTAAACAAGTCGCCGTGATCTTGAATC
CTGTAGTCAAAGCAGCACCAGCTCTGATCGACCCCCTGTATTTGATGGCTCAGGTCAGGTATTACTCAGG
AGAGCTAGAGAATGCCCAGAGCATCCTGCAGCGTTGCCTGGAGCTGGACCCCGCCTCCGTGGATGCCCAT
CTCCTCATGTGTCAGATCTACTTGGCTCAGGGCAACTTTGGCATGTGCTTCCACTGCTTAGAGCTGGGTG
TCAGCCACAACTTCCAGGTCCGAGATCACCCCCTCTACCACCTCATCAAGGCCAGGGCCCTCAACAAGGC
TGGAGACTATCCAGAGGCCATAAAGACGCTGAAAATGGTCATCAAATTGCCAGCTCTGAAGAAGGAAGAA
GGCAGAAAGTTCCTCAGGCCCTCTGTGCAGCCTAGCCAGCGGGCATCCATCTTATTGGAACTGGTGGAGG
CCCTCCGGCTGAATGGGGAGCTACATGAGGCCACCAAGGTCATGCAGGACACCATCAATGAGTTCGGTGG
CACACCAGAAGAGAACCGCATCACCATTGCCAACGTGGACTTGGTCCTGAGCAAGGGCAATGTGGACGTG
GCGCTGAACATGCTAAGGAACATCTTGCCCAAGCAGTCCTGCTATATGGAAGCCAGAGAGAAGATGGCCA
ACATCTACCTGCAGACCCTCAGAGACAGGCGCCTCTACATCAGATGCTACCGTGAGCTCTGTGAACATCT
GCCTGGCCCCCACACCAGCCTGCTACTGGGCGATGCCTTAATGAGCATTCTGGAGCCCGAGAAGGCCCTG
GAGGTCTATGATGAGGCCTATAGACAGAACCCACATGACGCCTCCCTGGCCAGCAGAATTGGGCACGCTT
ATGTGAAGGCCCACCAGTATACTGAGGCAATTGAGTATTATGAGGCTGCCCAGAAGATTAATGGACAGGA
CTTTCTGTGCTGCGATCTGGGCAAACTGCTCCTGAAGTTAAAGAAGGTCAATAAAGCAGAAAAAGTTTTG
AAGCAGGCACTGGAACATGACATTGTCCAAGACATCCCATCCATGATGAATGATGTTAAGTGCCTGCTTT
TGCTGGCAAAGGTTTACAAGAGCCATAAAAAAGAAGCTGTGATAGAAACTTTGAACAAGGCCTTGGACCT
CCAGTCTCGGATACTGAAGCGAGTTCCACTGGAGCAACCAGAAATGATTCCCTCCCAGAAGCAACTGGCA
GCCTCTATCTGCATCCAATTTGCAGAGCACTACCTGGCAGAGAAAGAGTATGACAAGGCGGTACAGTCTT
ATAAGGATGTCTTCTCCTACTTGCCAACTGACAATAAGGTGATGCTGGAGCTGGCGCAGCTCTACCTGCT
CCAGGGGCACCTGGACCTGTGTGAGCAGCACTGTGCCATCCTCCTGCAGACTGAGCAGAACCATGAGACC
GCTTCTGTGTTGATGGCTGACCTGATGTTTAGAAAACAGAAACATGAAGCGGCCATCAATCTTTACCACC
AAGTCTTGGAGAAAGCGCCAGACAATTTTTTGGTATTGCATAAATTAATCGATCTGCTAAGAAGAAGTGG
AAAACTTGAAGACATTCCTGCCTTCTTTGAATTGGCCAAGAAGGTGTCTAGCCGGGTGCCTTTGGAACCA
GGGTTCAATTACTGCAGAGGTATCTACTGCTGGCACATAGGGCAGCCCAACGAAGCCTTAAAGTTCCTGA
ACAAGGCACGCAAGGACAGCACTTGGGGCCAGAGCGCCATCTACCACATGGTGCAGATCTGTCTGAATCC
AGACAACGAGGTTGTGGGCGGAGAGGCTTTTGAGAACCAGGGAGCTGAGAGCAACTACATGGAGAAGAAG
GAGTTGGAGCAGCAGGGTGTGAGCACCGCCGAGAAACTGCTGCGTGAGTTTTACCCACATTCAGACTCCA
GCCAGACCCAGCTGCGGCTGCTGCAGGGCCTCTGCCGGCTGGCCACCAGGGAGAAGGCTAACATGGAGGC
TGCGCTGGGCAGCTTCATCCAGATAGCGCAGGCTGAGAAGGACAGCGTCCCTGCCCTGCTGGCCTTGGCA
CAAGCCTACGTGTTCCTGAAGCAGATCCCCAAGGCGCGTATGCAGTTGAAGCGCCTGGCCAAGACCCCCT
GGGTGCTGAGTGAGGCTGAGGACCTGGAGAAGAGCTGGCTCCTGCTGGCTGACATTTACTGCCAGGGCAG
CAAGTTCGACCTCGCCTTAGAACTGCTGCGGCGCTGTGTGCAATACAACAAGTCCTGCTACAAGGCCTAT
GAGTACATGGGCTTCATCATGGAGAAGGAGCAGTCCTACAAGGATGCAGTCACCAACTACAAACTGGCCT
GGAAGTACAGTCATCACGCCAACCCTGCCATTGGCTTCAAACTTGCTTTCAACTACCTGAAGGACAAGAA
ATTTGTGGAGGCCATTGAAATCTGCAACGATGTCCTCAGGGAGCACCCCGACTACCCCAAGATCAGGGAG
GAAATTTTGGAAAAGGCCCGAAGGTCCCTGAGGCCCTAG

Translation (1272 aa):
MSSNDSSLMAGIIYYSQEKYFHHVQQAAAVGLEKFSNDPVLKFFKAYGVLKEEHIQDAISDLESIRHHPD
VSLCSTMALIYAHKRCEIIDREAIQELEYSLKEIRKTVSGTALYYAGLFLWLIGRHDKAKEYIDRMLKIS
RGFREAMYFMMQQNYSEALEVVNQITVTSGSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDAC
QILTVHELAREGNMTTATNHVRNLIKALETREPENPSLHLKKIIVVSRLCGSHQVILGLVCSFIERTFMA
TPSYVHVATELGYLFILKNQVKEALLWYSEAMKLDKDGMAGLTGIILCHILEGHLEEAEYRLEFLKEVQK
SLGKSEVLIFLQALLMSRKHKGEEETTALLKEAVELHFSSMQGIPLGSEYFEKLDPYFLVCIAKEYLLFC
PKQPRLPGQIVSPLLKQVAVILNPVVKAAPALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAH
LLMCQIYLAQGNFGMCFHCLELGVSHNFQVRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLPALKKEE
GRKFLRPSVQPSQRASILLELVEALRLNGELHEATKVMQDTINEFGGTPEENRITIANVDLVLSKGNVDV
ALNMLRNILPKQSCYMEAREKMANIYLQTLRDRRLYIRCYRELCEHLPGPHTSLLLGDALMSILEPEKAL
EVYDEAYRQNPHDASLASRIGHAYVKAHQYTEAIEYYEAAQKINGQDFLCCDLGKLLLKLKKVNKAEKVL
KQALEHDIVQDIPSMMNDVKCLLLLAKVYKSHKKEAVIETLNKALDLQSRILKRVPLEQPEMIPSQKQLA
ASICIQFAEHYLAEKEYDKAVQSYKDVFSYLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHET
ASVLMADLMFRKQKHEAAINLYHQVLEKAPDNFLVLHKLIDLLRRSGKLEDIPAFFELAKKVSSRVPLEP
GFNYCRGIYCWHIGQPNEALKFLNKARKDSTWGQSAIYHMVQICLNPDNEVVGGEAFENQGAESNYMEKK
ELEQQGVSTAEKLLREFYPHSDSSQTQLRLLQGLCRLATREKANMEAALGSFIQIAQAEKDSVPALLALA
QAYVFLKQIPKARMQLKRLAKTPWVLSEAEDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAY
EYMGFIMEKEQSYKDAVTNYKLAWKYSHHANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHPDYPKIRE
EILEKARRSLRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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