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Report for CCDS43016.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43016.1 Public Homo sapiens 22 TRIOBP 24 110 108 CCDS HistoryNCBI Gene:11078Re-query CCDS DB by CCDS ID:43016.1Re-query CCDS DB by GeneID:11078See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43016.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000403663.6 ENSP00000386026.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000403663.6Link to Ensembl Protein Viewer:ENSP00000386026.2Re-query CCDS DB by Nucleotide ID:ENST00000403663Re-query CCDS DB by Protein ID:ENSP00000386026
Original member Current member NCBI NM_007032.5 NP_008963.3 Accepted alive Link to Nucleotide Sequence:NM_007032.5Link to Protein Sequence:NP_008963.3Re-query CCDS DB by Nucleotide ID:NM_007032Re-query CCDS DB by Protein ID:NP_008963Link to BLAST:NP_008963.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008963.3 652 Q9H2D6-7 652 100% 0 0

Chromosomal Locations for CCDS 43016.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 37746238 37746420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37751772 37751828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37754877 37754984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37755101 37755190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37755550 37755659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37757613 37758138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37759154 37759264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37765670 37765817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37768074 37768176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37769028 37769187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37769262 37769375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37771650 37771736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37772601 37772762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1959 nt):
ATGGGCGGATGGAAGGGGCCGGGGCAGCGTCGGGGAAAGGAAGGGCCGGAGGCGCGGCGGCGGGCGGCCG
AGAGGGGCGGCGGCGGCGGCGGCGGCGGGGTTCCCGCGCCGCGGAGCCCGGCCCGAGAGCCGCGTCCACG
TTCCTGCCTCCTGCTCCCGCCGCCCTGGGGCGCCGCCATGACGCCCGATCTGCTCAACTTCAAGAAGGGA
TGGATGTCGATCTTGGACGAGCCTGGAGAGCCTCCCTCCCCCTCGCTCACCACCACCTCTACTTCGCAGT
GGAAGAAACATTGGTTTGTGCTGACAGATTCAAGTCTCAAATATTACAGAGACTCCACTGCTGAGGAGGC
AGATGAGCTGGATGGTGAGATCGACCTGCGTTCCTGCACGGATGTCACTGAGTACGCGGTGCAGCGCAAC
TATGGCTTCCAGATCCACACCAAGGATGCTGTCTATACCTTGTCGGCCATGACCTCAGGCATCCGGCGGA
ACTGGATCGAGGCTCTGAGAAAGACCGTACGTCCAACTTCAGCCCCAGATGTCACCAAGCTCTCGGACTC
TAACAAGGAGAACGCGCTGCACAGCTACAGCACCCAGAAGGGCCCCCTGAAGGCAGGGGAGCAGCGGGCG
GGCTCTGAGGTCATCAGCCGGGGTGGCCCTCGGAAGGCGGACGGGCAGCGTCAGGCCTTGGACTACGTGG
AGCTCTCGCCGCTGACCCAGGCTTCCCCGCAGCGGGCCCGCACCCCAGCCCGCACTCCTGACCGCCTGGC
CAAGCAGGAGGAGCTGGAGCGGGACCTGGCCCAGCGCTCCGAGGAGCGGCGCAAGTGGTTTGAGGCCACA
GACAGCAGGACCCCAGAGGTGCCTGCTGGTGAGGGGCCGCGCCGGGGCCTGGGTGCCCCCCTGACTGAGG
ACCAGCAAAACCGGCTTAGTGAGGAGATCGAGAAGAAGTGGCAGGAGCTGGAGAAGCTGCCCCTGCGGGA
GAATAAGCGGGTGCCCCTCACTGCCCTGCTCAACCAAAGCCGCGGAGAGCGCCGAGGGCCCCCAAGTGAC
GGCCACGAGGCACTGGAGAAGGAGGTTCAGGCTCTTCGGGCCCAGCTGGAGGCGTGGCGTCTCCAAGGGG
AGGCTCCTCAGAGTGCACTGAGATCCCAGGAGGATGGCCACATCCCCCCGGGCTACATCTCACAGGAGGC
ATGTGAGCGCAGCCTGGCAGAGATGGAGTCCTCGCACCAGCAGGTGATGGAGGAGCTGCAGCGGCACCAC
GAGCGGGAGCTGCAGCGCCTGCAGCAGGAGAAGGAGTGGCTCCTGGCTGAGGAGACGGCAGCCACGGCCT
CAGCCATTGAAGCCATGAAGAAGGCCTACCAGGAAGAGCTGAGCCGAGAGCTGAGCAAAACACGGAGTCT
CCAGCAGGGCCCGGATGGCCTCCGGAAGCAGCACCAGTCAGATGTGGAGGCACTGAAGCGAGAGCTGCAG
GTGCTATCGGAGCAGTACTCGCAGAAGTGCCTGGAGATTGGGGCACTCATGCGGCAGGCTGAGGAGCGCG
AGCACACGCTGCGCCGCTGCCAGCAGGAGGGCCAGGAGCTGCTGCGCCACAACCAGGAGCTGCATGGCCG
CCTGTCAGAGGAGATAGACCAGCTGCGCGGCTTCATTGCCTCGCAGGGCATGGGCAATGGCTGCGGGCGC
AGCAACGAGCGGAGTTCCTGCGAGCTAGAGGTGCTGCTTCGCGTAAAAGAAAACGAACTCCAGTACCTAA
AGAAGGAGGTGCAGTGCCTCCGGGACGAGCTCCAGATGATGCAGAAGGACAAGCGCTTCACCTCGGGAAA
GTACCAGGACGTCTATGTGGAGCTGAGCCACATCAAGACACGGTCTGAGCGGGAGATCGAGCAGCTGAAG
GAGCACCTGCGTCTTGCCATGGCCGCCCTCCAGGAGAAGGAGTCGATGCGCAACAGCCTGGCTGAGTAG

Translation (652 aa):
MGGWKGPGQRRGKEGPEARRRAAERGGGGGGGGVPAPRSPAREPRPRSCLLLPPPWGAAMTPDLLNFKKG
WMSILDEPGEPPSPSLTTTSTSQWKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAVQRN
YGFQIHTKDAVYTLSAMTSGIRRNWIEALRKTVRPTSAPDVTKLSDSNKENALHSYSTQKGPLKAGEQRA
GSEVISRGGPRKADGQRQALDYVELSPLTQASPQRARTPARTPDRLAKQEELERDLAQRSEERRKWFEAT
DSRTPEVPAGEGPRRGLGAPLTEDQQNRLSEEIEKKWQELEKLPLRENKRVPLTALLNQSRGERRGPPSD
GHEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQEACERSLAEMESSHQQVMEELQRHH
ERELQRLQQEKEWLLAEETAATASAIEAMKKAYQEELSRELSKTRSLQQGPDGLRKQHQSDVEALKRELQ
VLSEQYSQKCLEIGALMRQAEEREHTLRRCQQEGQELLRHNQELHGRLSEEIDQLRGFIASQGMGNGCGR
SNERSSCELEVLLRVKENELQYLKKEVQCLRDELQMMQKDKRFTSGKYQDVYVELSHIKTRSEREIEQLK
EHLRLAMAALQEKESMRNSLAE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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