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Report for CCDS42933.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42933.1 Public Homo sapiens 21 C2CD2 24 110 108 CCDS HistoryNCBI Gene:25966Re-query CCDS DB by CCDS ID:42933.1Re-query CCDS DB by GeneID:25966See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42933.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380486.4 ENSP00000369853.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380486.4Link to Ensembl Protein Viewer:ENSP00000369853.3Re-query CCDS DB by Nucleotide ID:ENST00000380486Re-query CCDS DB by Protein ID:ENSP00000369853
Original member Current member NCBI NM_015500.2 NP_056315.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015500.2Link to Protein Sequence:NP_056315.1Re-query CCDS DB by Nucleotide ID:NM_015500Re-query CCDS DB by Protein ID:NP_056315Link to BLAST:NP_056315.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056315.1 696 Q9Y426-1 696 100% 0 0

Chromosomal Locations for CCDS 42933.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 41889124 41889344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41899053 41899362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41901622 41901749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41905724 41905837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41906992 41907166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41907660 41907784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41909459 41909523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41912332 41912440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41914598 41914721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41918105 41918227 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41918856 41918960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41921972 41922085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41942147 41942245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41953370 41953648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2091 nt):
ATGGCCATGGCCCGGCTGGGCTCGTGGCTCGGGGAGGCGCAGTGGCTCGCGCTGGTGTCGCTCTTCGTCG
CGGCCCTGGCCACGGTAGGCCTGTACCTGGCGCAGTGGGCGCTGGCCAGGGCGCGACCCCAGCCCCAGCG
GCGGGCGGTGGAGCCTGGAGAGGGGCCGCGCCCGGGGTCCGACGCGCTGCTCTCCTGGATCCTGACGCTG
GGCAGCTGGAGGAGCCAGTGGCAGGCGGCCTGGGTGACCGCCCTGAACGAGGAGGCCGAGAGGAAAGGGG
GCCCACCTTTCCTGTCCTTTGAGGAGGACCCGCGGCAGCAGGCACTGGAGCTGGTGGTGCAGGAGGTCTC
CAGCGTGCTCAGGTCGGCGGAGGAGAAGGTGGTGGTCTGTCACGTGGTGGGCCAGGCTATTCAGTTCTTG
GTCAGCGAGACGCCTGCCTTGGGTGCTGGATGCCGGCTGTACGACATGCGGCTCTCCCCTTTCCATTTAC
AGCTGGAGTTCCACATGAAGGAGAAGAGAGAGGACCTCCAGATTAGCTGGTCTTTCATCAGTGTGCCGGA
AATGGCCGTTAATATCCAGCCCAAAGCACTGGGGGAGGACCAGGTGGCTGAGACAAGTGCGATGTCTGAC
GTTCTCAAGGACATCTTGAAGCATTTGGCTGGTTCTGCCTCTCCATCAGTGGTTCTGATTACCAAGCCCA
CGACTGTAAAGGAAGCTCAGAACTTACAGTGTGCTGCATCTACTGCTCAGGAATCCTGTCCTCCTAAACC
TCCAAGGGCTCACGAGCTGAAGCTACTGGTGAGGAACATCCACGTCTTGCTGCTCAGCGAGCCCGGTGCC
TCAGGCCACATTAATGCAGTGTGCGTCGTGCAGCTGAACGATCCTGTTCAGAGGTTCTCCAGCACCCTGA
CGAAAAACACTCCGGACCTCATGTGGGAAGAGGAATTCACCTTCGAGTTGAATGCCAAGTCGAAGGAGTT
ACACCTGCAGATTTCAGAGGCTGGGCGATCCTCAGAAGGTCTGCTGGCGACGGCGACAGTTCCTCTGGAC
TTATTTAAGAAGCAGCCTTCTGGGCCACAGAGCTTCACGCTGACCAGCGGGTCTGCCTGCGGCAGCTCGG
TGCTGGGCTCGGTCACGGCAGAGTTCTCTTACATGGAACCTGGTGAATTGAAATCCTGGCCCATCCCTCC
CCCTGTTCCTGCTGCAAAAATAGAAAAGGACCGCACGGTGATGCCCTGTGGGACTGTGGTCACTACTGTC
ACTGCTGTGAAGACCAAGCCTCGCGTCGACGTGGGGAGGGCGTCCCCGCTGAGCTCTGATTCTCCGGTGA
AGACTCCCATCAAGGTGAAGGTGATCGAGAAGGACATCTCTGTCCAGGCCATCGCCTGCCGCAGCGCCCC
CGTCAGCAAAACACTCTCTTCTTCAGACACAGAATTGTTGGTGTTGAATGGTTCGGATCCAGTGGCTGAA
GTGGCCATTCGACAGCTCAGTGAATCTTCAAAGCTGAAACTCAAGTCGCCACGGAAGAAAAGCACTATTA
TCATATCAGGGATCTCCAAGACCTCACTATCTCAGGACCACGACGCTGCCCTGATGCAGGGCTACACGGC
CTCTGTGGACAGCACCCACCAGGAGGACGCCCCATCCCATCCGGAGAGGGCGGCAGCCTCTGCCCCGCCA
GAGGAAGCCGAGTCAGCCCAGGCATCCCTTGCCCCCAAGCCCCAGGAGGACGAGCTAGACTCCTGGGACT
TGGAGAAGGAGCCACAGGCCGCGGCATGGAGCAGCCAGGTCCTGCTGGACCCCGACGGTGATGAGCTGTC
AGAGAGCTCCATGAGTGTCTTGGAGCCGGGCACTGCCAAAAAGCATAAAGGAGGAATTCTAAGGAAAGGT
GCAAAGCTGTTCTTCCGCCGGCGGCATCAACAGAAAGACCCAGGCATGAGTCAGTCACACAATGACCTTG
TGTTCCTGGAGCAGCCAGAGGGTTCCCGGAGGAAAGGCATCACCCTCACCAGGATCCTGAACAAGAAGCT
GCTCTCCAGGCACAGAAACAAGAACACCATGAACGGTGCCCCCGTGGAGCCCTGCACGTAG

Translation (696 aa):
MAMARLGSWLGEAQWLALVSLFVAALATVGLYLAQWALARARPQPQRRAVEPGEGPRPGSDALLSWILTL
GSWRSQWQAAWVTALNEEAERKGGPPFLSFEEDPRQQALELVVQEVSSVLRSAEEKVVVCHVVGQAIQFL
VSETPALGAGCRLYDMRLSPFHLQLEFHMKEKREDLQISWSFISVPEMAVNIQPKALGEDQVAETSAMSD
VLKDILKHLAGSASPSVVLITKPTTVKEAQNLQCAASTAQESCPPKPPRAHELKLLVRNIHVLLLSEPGA
SGHINAVCVVQLNDPVQRFSSTLTKNTPDLMWEEEFTFELNAKSKELHLQISEAGRSSEGLLATATVPLD
LFKKQPSGPQSFTLTSGSACGSSVLGSVTAEFSYMEPGELKSWPIPPPVPAAKIEKDRTVMPCGTVVTTV
TAVKTKPRVDVGRASPLSSDSPVKTPIKVKVIEKDISVQAIACRSAPVSKTLSSSDTELLVLNGSDPVAE
VAIRQLSESSKLKLKSPRKKSTIIISGISKTSLSQDHDAALMQGYTASVDSTHQEDAPSHPERAAASAPP
EEAESAQASLAPKPQEDELDSWDLEKEPQAAAWSSQVLLDPDGDELSESSMSVLEPGTAKKHKGGILRKG
AKLFFRRRHQQKDPGMSQSHNDLVFLEQPEGSRRKGITLTRILNKKLLSRHRNKNTMNGAPVEPCT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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