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Report for CCDS42930.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42930.1 Public Homo sapiens 21 FAM3B 24 110 108 CCDS HistoryNCBI Gene:54097Re-query CCDS DB by CCDS ID:42930.1Re-query CCDS DB by GeneID:54097See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42930.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398647.7 ENSP00000381642.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398647.7Link to Ensembl Protein Viewer:ENSP00000381642.3Re-query CCDS DB by Nucleotide ID:ENST00000398647Re-query CCDS DB by Protein ID:ENSP00000381642
Original member Current member NCBI NM_206964.2 NP_996847.1 Accepted alive Link to Nucleotide Sequence:NM_206964.2Link to Protein Sequence:NP_996847.1Re-query CCDS DB by Nucleotide ID:NM_206964Re-query CCDS DB by Protein ID:NP_996847Link to BLAST:NP_996847.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_996847.1 187 P58499-3 187 100% 0 0

Chromosomal Locations for CCDS 42930.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 41316880 41316898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41338378 41338501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41344476 41344534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41345686 41345736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41347013 41347100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41348592 41348724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41357108 41357197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (564 nt):
ATGCGCCCATTGGCTGGTGCTCCAGTCCCCAAAAGGCAAAAATGTGACCACTGGACTCCCTGCCCATCTG
ACACCTATGCCTACAGGTTACTCAGCGGAGGTGGCAGAAGCAAGTACGCCAAAATCTGCTTTGAGGATAA
CCTACTTATGGGAGAACAGCTGGGAAATGTTGCCAGAGGAATAAACATTGCCATTGTCAACTATGTAACT
GGGAATGTGACAGCAACACGATGTTTTGATATGTATGAAGGTGATAACTCTGGACCGATGACAAAGTTTA
TTCAGAGTGCTGCTCCAAAATCCCTGCTCTTCATGGTGACCTATGACGACGGAAGCACAAGACTGAATAA
CGATGCCAAGAATGCCATAGAAGCACTTGGAAGTAAAGAAATCAGGAACATGAAATTCAGGTCTAGCTGG
GTATTTATTGCAGCAAAAGGCTTGGAACTCCCTTCCGAAATTCAGAGAGAAAAGATCAACCACTCTGATG
CTAAGAACAACAGATATTCTGGCTGGCCTGCAGAGATCCAGATAGAAGGCTGCATACCCAAAGAACGAAG
CTGA

Translation (187 aa):
MRPLAGAPVPKRQKCDHWTPCPSDTYAYRLLSGGGRSKYAKICFEDNLLMGEQLGNVARGINIAIVNYVT
GNVTATRCFDMYEGDNSGPMTKFIQSAAPKSLLFMVTYDDGSTRLNNDAKNAIEALGSKEIRNMKFRSSW
VFIAAKGLELPSEIQREKINHSDAKNNRYSGWPAEIQIEGCIPKERS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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