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Report for CCDS42830.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42830.1 Public Homo sapiens 2 PID1 24 110 108 CCDS HistoryNCBI Gene:55022Re-query CCDS DB by CCDS ID:42830.1Re-query CCDS DB by GeneID:55022See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42830.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392055.8 ENSP00000375908.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392055.8Link to Ensembl Protein Viewer:ENSP00000375908.3Re-query CCDS DB by Nucleotide ID:ENST00000392055Re-query CCDS DB by Protein ID:ENSP00000375908
Original member Current member NCBI NM_001100818.2 NP_001094288.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001100818.2Link to Protein Sequence:NP_001094288.1Re-query CCDS DB by Nucleotide ID:NM_001100818Re-query CCDS DB by Protein ID:NP_001094288Link to BLAST:NP_001094288.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001094288.1 217 Q7Z2X4-4 217 100% 0 0

Chromosomal Locations for CCDS 42830.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 229025632 229026108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 229155818 229155964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 229271014 229271043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGTGGCAGCCGGCCACGGAGCGCCTGCAGCACTTTCAGACCATGCTGAAGTCTAAATTGAATGTCTTAA
CACTGAAAAAGGAACCTCTCCCAGCGGTCATCTTCCATGAGCCGGAGGCCATTGAGCTGTGCACGACCAC
ACCGCTGATGAAGACAAGGACTCACAGTGGCTGCAAGGTTACCTACCTGGGCAAAGTCTCCACCACTGGC
ATGCAGTTTTTGTCAGGCTGCACAGAAAAGCCAGTCATTGAGCTCTGGAAGAAGCACACGCTAGCCCGAG
AGGATGTCTTTCCGGCCAATGCCCTCCTGGAAATCCGGCCATTCCAAGTTTGGCTCCATCATCTCGACCA
CAAAGGGGAGGCCACAGTGCACATGGATACCTTCCAGGTGGCCCGCATCGCCTACTGCACCGCCGACCAC
AACGTGAGCCCCAACATCTTCGCCTGGGTCTACAGGGAGATCAATGATGACCTGTCCTACCAGATGGACT
GCCACGCCGTGGAGTGCGAGAGCAAGCTCGAGGCCAAGAAACTGGCCCACGCCATGATGGAGGCCTTCAG
GAAGACTTTCCACAGTATGAAGAGCGACGGGCGGATCCACAGCAACAGCTCCTCCGAAGAGGTTTCCCAG
GAATTGGAATCCGATGATGGCTGA

Translation (217 aa):
MWQPATERLQHFQTMLKSKLNVLTLKKEPLPAVIFHEPEAIELCTTTPLMKTRTHSGCKVTYLGKVSTTG
MQFLSGCTEKPVIELWKKHTLAREDVFPANALLEIRPFQVWLHHLDHKGEATVHMDTFQVARIAYCTADH
NVSPNIFAWVYREINDDLSYQMDCHAVECESKLEAKKLAHAMMEAFRKTFHSMKSDGRIHSNSSSEEVSQ
ELESDDG


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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