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Report for CCDS42821.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42821.1 Public Homo sapiens 2 ANKZF1 24 110 108 CCDS HistoryNCBI Gene:55139Re-query CCDS DB by CCDS ID:42821.1Re-query CCDS DB by GeneID:55139See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42821.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323348.10 ENSP00000321617.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000323348.10Link to Ensembl Protein Viewer:ENSP00000321617.5Re-query CCDS DB by Nucleotide ID:ENST00000323348Re-query CCDS DB by Protein ID:ENSP00000321617
Original member Current member EBI ENST00000410034.7 ENSP00000386337.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000410034.7Link to Ensembl Protein Viewer:ENSP00000386337.3Re-query CCDS DB by Nucleotide ID:ENST00000410034Re-query CCDS DB by Protein ID:ENSP00000386337
Original member Current member NCBI NM_001042410.2 NP_001035869.1 Accepted alive Link to Nucleotide Sequence:NM_001042410.2Link to Protein Sequence:NP_001035869.1Re-query CCDS DB by Nucleotide ID:NM_001042410Re-query CCDS DB by Protein ID:NP_001035869Link to BLAST:NP_001035869.1
Original member Current member NCBI NM_018089.3 NP_060559.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018089.3Link to Protein Sequence:NP_060559.2Re-query CCDS DB by Nucleotide ID:NM_018089Re-query CCDS DB by Protein ID:NP_060559Link to BLAST:NP_060559.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035869.1 726 Q9H8Y5 726 100% 0 0
NP_060559.2 726 Q9H8Y5 726 100% 0 0

Chromosomal Locations for CCDS 42821.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 219230258 219230405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219231928 219232040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219232260 219232362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219232490 219232683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219233079 219233191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219233286 219233433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219233715 219233943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219234133 219234288 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219234826 219235312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219235474 219235585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219235708 219235875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219236010 219236095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 219236322 219236445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2181 nt):
ATGTCGCCGGCTCCAGATGCAGCCCCGGCTCCTGCGTCGATCTCCCTGTTTGACCTCAGCGCGGATGCTC
CGGTCTTTCAGGGCCTGAGCCTGGTGAGCCACGCGCCTGGGGAGGCTCTGGCCCGGGCTCCGCGTACTTC
CTGTTCAGGCTCAGGGGAGAGAGAAAGCCCAGAAAGAAAGCTACTCCAGGGTCCTATGGATATTTCAGAG
AAGTTATTTTGTTCAACTTGTGACCAGACCTTCCAGAACCACCAAGAACAGAGGGAACATTATAAGCTTG
ACTGGCATCGGTTTAACCTAAAGCAACGTCTCAAGGACAAGCCTCTCCTGTCTGCCCTGGACTTTGAAAA
GCAGAGCTCCACAGGAGATCTTTCCAGCATCTCGGGATCAGAAGACTCAGACTCAGCCAGTGAGGAGGAC
TTGCAGACACTGGATCGGGAGAGGGCTACATTTGAGAAGTTGAGCCGACCCCCAGGCTTTTACCCTCATC
GAGTTCTTTTCCAGAATGCCCAGGGCCAGTTTCTTTATGCCTACCGCTGTGTCCTAGGCCCTCATCAGGA
TCCCCCAGAAGAGGCAGAACTGCTGCTACAGAACCTGCAAAGTAGAGGTCCCAGAGACTGCGTGGTGCTC
ATGGCTGCAGCTGGGCACTTTGCTGGTGCTATATTTCAAGGAAGAGAAGTGGTGACACACAAAACTTTTC
ACCGCTATACGGTTCGGGCCAAGCGGGGCACAGCCCAGGGGCTTCGGGATGCCCGAGGTGGGCCATCACA
CTCTGCTGGAGCCAACCTGAGGCGCTACAATGAAGCCACACTATATAAGGATGTTCGTGACCTGCTGGCA
GGGCCAAGCTGGGCTAAGGCGCTGGAGGAGGCTGGTACAATACTGTTGCGTGCTCCCCGCTCTGGCCGGT
CTTTGTTCTTTGGAGGCAAGGGAGCACCCCTGCAAAGGGGGGATCCCCGACTTTGGGATATCCCCCTCGC
CACCCGCAGACCCACCTTCCAAGAGCTACAGCGTGTGCTCCATAAGCTGACCACTTTGCATGTCTATGAA
GAAGACCCTCGGGAAGCAGTCAGACTGCACTCACCTCAGACACACTGGAAAACAGTAAGAGAGGAGAGAA
AGAAGCCTACTGAGGAAGAAATAAGAAAGATCTGCAGGGATGAAAAGGAAGCGCTGGGGCAGAATGAGGA
ATCTCCCAAACAGGGTTCAGGGTCGGAGGGAGAAGATGGCTTTCAGGTAGAGTTGGAGCTAGTGGAGTTG
ACTGTGGGGACTCTGGATCTTTGTGAGTCTGAAGTATTGCCCAAGCGGAGGAGGAGAAAAAGGAATAAGA
AGGAGAAAAGCCGAGACCAGGAGGCTGGGGCACATCGGACTCTTCTCCAGCAAACTCAAGAAGAGGAGCC
TTCCACACAGTCATCCCAGGCAGTTGCTGCCCCCTTGGGCCCTTTGCTGGATGAGGCCAAAGCCCCTGGT
CAGCCAGAGCTCTGGAATGCACTGCTTGCTGCTTGCCGAGCTGGAGATGTTGGAGTGCTAAAGCTGCAGC
TAGCTCCCAGCCCTGCAGACCCTAGAGTTCTGTCTCTGCTCAGTGCCCCCTTGGGCTCCGGTGGCTTTAC
TCTCCTGCATGCAGCAGCTGCAGCTGGAAGAGGCTCAGTGGTTCGTCTGCTGCTGGAAGCAGGTGCTGAC
CCCACTGTGCAGGACTCTCGGGCCCGGCCACCTTATACTGTTGCGGCTGACAAATCAACACGTAATGAGT
TCCGAAGGTTCATGGAGAAGAATCCAGATGCCTACGATTACAACAAGGCTCAGGTGCCAGGACCATTGAC
ACCAGAAATGGAGGCACGGCAGGCTACACGGAAAAGGGAGCAGAAGGCAGCCCGGCGGCAACGGGAGGAA
CAGCAGCAGAGGCAGCAGGAGCAGGAGGAGCGTGAACGAGAAGAGCAGCGGCGATTTGCCGCCCTCAGTG
ACCGAGAGAAGAGAGCTCTGGCTGCAGAGCGCCGACTCGCTGCCCAGTTGGGAGCCCCTACCTCTCCAAT
CCCTGACTCTGCAATCGTCAATACTCGACGCTGCTGGAGTTGTGGGGCATCCCTCCAAGGCCTGACTCCC
TTTCACTACCTCGACTTCTCTTTCTGCTCCACACGTTGCCTCCAGGATCATCGCCGTCAGGCAGGGAGGC
CCTCTTCCTGA

Translation (726 aa):
MSPAPDAAPAPASISLFDLSADAPVFQGLSLVSHAPGEALARAPRTSCSGSGERESPERKLLQGPMDISE
KLFCSTCDQTFQNHQEQREHYKLDWHRFNLKQRLKDKPLLSALDFEKQSSTGDLSSISGSEDSDSASEED
LQTLDRERATFEKLSRPPGFYPHRVLFQNAQGQFLYAYRCVLGPHQDPPEEAELLLQNLQSRGPRDCVVL
MAAAGHFAGAIFQGREVVTHKTFHRYTVRAKRGTAQGLRDARGGPSHSAGANLRRYNEATLYKDVRDLLA
GPSWAKALEEAGTILLRAPRSGRSLFFGGKGAPLQRGDPRLWDIPLATRRPTFQELQRVLHKLTTLHVYE
EDPREAVRLHSPQTHWKTVREERKKPTEEEIRKICRDEKEALGQNEESPKQGSGSEGEDGFQVELELVEL
TVGTLDLCESEVLPKRRRRKRNKKEKSRDQEAGAHRTLLQQTQEEEPSTQSSQAVAAPLGPLLDEAKAPG
QPELWNALLAACRAGDVGVLKLQLAPSPADPRVLSLLSAPLGSGGFTLLHAAAAAGRGSVVRLLLEAGAD
PTVQDSRARPPYTVAADKSTRNEFRRFMEKNPDAYDYNKAQVPGPLTPEMEARQATRKREQKAARRQREE
QQQRQQEQEEREREEQRRFAALSDREKRALAAERRLAAQLGAPTSPIPDSAIVNTRRCWSCGASLQGLTP
FHYLDFSFCSTRCLQDHRRQAGRPSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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