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Report for CCDS42816.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42816.1 Public Homo sapiens 2 PNKD 24 110 108 CCDS HistoryNCBI Gene:25953Re-query CCDS DB by CCDS ID:42816.1Re-query CCDS DB by GeneID:25953See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42816.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000248451.7 ENSP00000248451.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000248451.7Link to Ensembl Protein Viewer:ENSP00000248451.3Re-query CCDS DB by Nucleotide ID:ENST00000248451Re-query CCDS DB by Protein ID:ENSP00000248451
Original member Current member NCBI NM_001077399.3 NP_001070867.1 Accepted alive Link to Nucleotide Sequence:NM_001077399.3Link to Protein Sequence:NP_001070867.1Re-query CCDS DB by Nucleotide ID:NM_001077399Re-query CCDS DB by Protein ID:NP_001070867Link to BLAST:NP_001070867.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070867.1 142 Q8N490-2 142 100% 0 0

Chromosomal Locations for CCDS 42816.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 218270536 218270602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218271381 218271549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218272570 218272762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (429 nt):
ATGGCGGCGGTGGTAGCTGCTACGGCGCTGAAGGGCCGGGGGGCGAGAAATGCCCGCGTCCTCCGGGGGA
TTCTCGCAGGAGCCACAGCTAACAAGGCTTCTCATAACAGGACCCGGGCCCTGCAAAGCCACAGCTCCCC
AGAGGGCAAGGAGGAACCTGAACCCCTATCCCCGGAGCTGGAATACATTCCCAGAAAGAGGGGCAAGAAC
CCCATGAAAGCTGTGGGACTGGCCTGGGCCATCGGCTTCCCTTGTGGTATCCTCCTCTTCATCCTCACCA
AGCGGGAAGTGGACAAGGACCGTGTGAAGCAGATGAAGGCTCGGCAGAACATGCGGTTGTCCAACACGGG
CGAGTATGAGAGCCAGAGGTTCAGGGCTTCCTCCCAGAGTGCCCCGTCCCCTGATGTTGGGTCTGGGGTG
CAGACCTGA

Translation (142 aa):
MAAVVAATALKGRGARNARVLRGILAGATANKASHNRTRALQSHSSPEGKEEPEPLSPELEYIPRKRGKN
PMKAVGLAWAIGFPCGILLFILTKREVDKDRVKQMKARQNMRLSNTGEYESQRFRASSQSAPSPDVGSGV
QT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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