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Report for CCDS4279.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4279.1 Public Homo sapiens 5 YIPF5 24 110 108 CCDS HistoryNCBI Gene:81555Re-query CCDS DB by CCDS ID:4279.1Re-query CCDS DB by GeneID:81555See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4279.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274496.10 ENSP00000274496.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274496.10Link to Ensembl Protein Viewer:ENSP00000274496.5Re-query CCDS DB by Nucleotide ID:ENST00000274496Re-query CCDS DB by Protein ID:ENSP00000274496
Original member Current member EBI ENST00000448443.6 ENSP00000397704.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448443.6Link to Ensembl Protein Viewer:ENSP00000397704.2Re-query CCDS DB by Nucleotide ID:ENST00000448443Re-query CCDS DB by Protein ID:ENSP00000397704
Original member Current member NCBI NM_001024947.4 NP_001020118.1 Accepted alive Link to Nucleotide Sequence:NM_001024947.4Link to Protein Sequence:NP_001020118.1Re-query CCDS DB by Nucleotide ID:NM_001024947Re-query CCDS DB by Protein ID:NP_001020118Link to BLAST:NP_001020118.1
Original member Current member NCBI NM_030799.9 NP_110426.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_030799.9Link to Protein Sequence:NP_110426.4Re-query CCDS DB by Nucleotide ID:NM_030799Re-query CCDS DB by Protein ID:NP_110426Link to BLAST:NP_110426.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020118.1 257 Q969M3-1 257 100% 0 0
NP_110426.4 257 Q969M3-1 257 100% 0 0

Chromosomal Locations for CCDS 4279.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 144160397 144160559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144162218 144162399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144164111 144164256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144165432 144165604 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 144169846 144169955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (774 nt):
ATGTCAGGCTTTGAAAACTTAAACACGGATTTCTACCAGACAAGTTACAGCATCGATGATCAGTCACAGC
AGTCCTATGATTATGGAGGAAGTGGAGGACCCTATAGCAAACAGTATGCTGGCTATGACTATTCGCAGCA
AGGCAGATTTGTCCCTCCAGACATGATGCAGCCACAACAGCCATACACCGGGCAGATTTACCAGCCAACT
CAGGCATATACTCCAGCTTCACCTCAGCCTTTCTATGGAAACAACTTTGAGGATGAGCCACCTTTATTAG
AAGAGTTAGGTATCAATTTTGACCACATCTGGCAAAAAACACTAACAGTATTACATCCGTTAAAAGTAGC
AGATGGCAGCATCATGAATGAAACTGATTTGGCAGGTCCAATGGTTTTTTGCCTTGCTTTTGGAGCCACA
TTGCTACTGGCTGGCAAAATCCAGTTTGGCTATGTATACGGGATCAGTGCAATTGGATGTCTAGGAATGT
TTTGTTTATTAAACTTAATGAGTATGACAGGTGTTTCATTTGGTTGTGTGGCAAGTGTCCTTGGATATTG
TCTTCTGCCCATGATCCTACTTTCCAGCTTTGCAGTGATATTTTCTTTGCAAGGAATGGTAGGAATCATT
CTCACTGCTGGGATTATTGGATGGTGTAGTTTTTCTGCTTCCAAAATATTTATTTCTGCATTAGCCATGG
AAGGACAGCAACTTTTAGTAGCATATCCTTGCGCTTTGTTATATGGAGTCTTTGCCCTGATTTCCGTCTT
TTGA

Translation (257 aa):
MSGFENLNTDFYQTSYSIDDQSQQSYDYGGSGGPYSKQYAGYDYSQQGRFVPPDMMQPQQPYTGQIYQPT
QAYTPASPQPFYGNNFEDEPPLLEELGINFDHIWQKTLTVLHPLKVADGSIMNETDLAGPMVFCLAFGAT
LLLAGKIQFGYVYGISAIGCLGMFCLLNLMSMTGVSFGCVASVLGYCLLPMILLSSFAVIFSLQGMVGII
LTAGIIGWCSFSASKIFISALAMEGQQLLVAYPCALLYGVFALISVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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