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Report for CCDS42737.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42737.1 Public Homo sapiens 2 C1QL2 24 110 108 CCDS HistoryNCBI Gene:165257Re-query CCDS DB by CCDS ID:42737.1Re-query CCDS DB by GeneID:165257See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42737.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272520.4 ENSP00000272520.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000272520.4Link to Ensembl Protein Viewer:ENSP00000272520.3Re-query CCDS DB by Nucleotide ID:ENST00000272520Re-query CCDS DB by Protein ID:ENSP00000272520
Original member Current member NCBI NM_182528.4 NP_872334.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182528.4Link to Protein Sequence:NP_872334.2Re-query CCDS DB by Nucleotide ID:NM_182528Re-query CCDS DB by Protein ID:NP_872334Link to BLAST:NP_872334.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_872334.2 287 Q7Z5L3 287 100% 0 0

Chromosomal Locations for CCDS 42737.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 119156802 119156981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 119157586 119158269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (864 nt):
ATGGCGCTCGGGCTGCTCATCGCCGTGCCGCTGCTGCTGCAGGCGGCGCCCCGAGGCGCCGCGCACTATG
AGATGATGGGCACCTGCCGCATGATCTGCGACCCTTACACTGCCGCGCCCGGCGGGGAGCCCCCGGGTGC
AAAGGCGCAGCCACCCGGACCCAGCACCGCCGCCCTGGAAGTCATGCAGGACCTCAGCGCCAACCCTCCT
CCTCCTTTCATCCAGGGACCCAAGGGCGACCCGGGGCGACCGGGCAAGCCAGGGCCGCGGGGGCCCCCTG
GAGAGCCGGGCCCGCCTGGACCCAGGGGCCCTCCGGGAGAGAAGGGCGACTCGGGGCGGCCCGGGCTGCC
AGGGCTGCAACTGACGGCGGGCACGGCCAGCGGCGTCGGGGTGGTGGGCGGCGGGGCCGGGGTAGGTGGC
GATTCCGAGGGTGAAGTGACCAGTGCGCTGAGCGCCACCTTCAGCGGCCCCAAGATCGCCTTCTATGTGG
GTCTCAAGAGCCCCCACGAAGGCTATGAGGTGCTGAAGTTCGATGACGTGGTCACCAACCTCGGCAATCA
CTATGACCCCACCACGGGCAAGTTCAGCTGCCAGGTACGCGGCATCTACTTCTTCACCTACCACATCCTC
ATGCGCGGCGGCGACGGCACCAGCATGTGGGCGGACCTCTGCAAGAACGGGCAGGTCCGGGCCAGCGCCA
TTGCACAGGACGCCGACCAGAACTACGACTACGCCAGTAACAGCGTGGTGCTGCACTTGGATTCAGGGGA
CGAAGTGTATGTGAAGCTGGATGGCGGGAAGGCTCACGGAGGCAATAATAACAAGTACAGCACGTTCTCG
GGCTTTCTTCTGTACCCGGATTAG

Translation (287 aa):
MALGLLIAVPLLLQAAPRGAAHYEMMGTCRMICDPYTAAPGGEPPGAKAQPPGPSTAALEVMQDLSANPP
PPFIQGPKGDPGRPGKPGPRGPPGEPGPPGPRGPPGEKGDSGRPGLPGLQLTAGTASGVGVVGGGAGVGG
DSEGEVTSALSATFSGPKIAFYVGLKSPHEGYEVLKFDDVVTNLGNHYDPTTGKFSCQVRGIYFFTYHIL
MRGGDGTSMWADLCKNGQVRASAIAQDADQNYDYASNSVVLHLDSGDEVYVKLDGGKAHGGNNNKYSTFS
GFLLYPD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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  VEGA Genome Browser

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