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Report for CCDS4257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4257.1 Public Homo sapiens 5 PCDHB15 24 110 108 CCDS HistoryNCBI Gene:56121Re-query CCDS DB by CCDS ID:4257.1Re-query CCDS DB by GeneID:56121See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4257.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000231173.6 ENSP00000231173.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000231173.6Link to Ensembl Protein Viewer:ENSP00000231173.3Re-query CCDS DB by Nucleotide ID:ENST00000231173Re-query CCDS DB by Protein ID:ENSP00000231173
Original member Current member NCBI NM_018935.4 NP_061758.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018935.4Link to Protein Sequence:NP_061758.1Re-query CCDS DB by Nucleotide ID:NM_018935Re-query CCDS DB by Protein ID:NP_061758Link to BLAST:NP_061758.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061758.1 787 Q9Y5E8 787 100% 0 0

Chromosomal Locations for CCDS 4257.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141245579 141247942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2364 nt):
ATGGAGCCTGCAGGGGAGCGCTTTCCCGAACAAAGGCAAGTCCTGATTCTCCTTCTTTTACTGGAAGTGA
CTCTGGCAGGCTGGGAACCCCGTCGCTATTCTGTGATGGAGGAAACAGAGAGAGGTTCTTTTGTAGCCAA
CCTGGCCAATGACCTAGGGCTGGGAGTGGGGGAGCTAGCCGAGCGGGGAGCCCGGGTAGTTTCTGAGGAT
AACGAACAAGGCTTGCAGCTTGATCTGCAGACCGGGCAGTTGATATTAAATGAGAAGCTGGACCGGGAGA
AGCTGTGTGGCCCTACTGAGCCCTGTATAATGCATTTCCAAGTGTTACTGAAAAAACCTTTGGAAGTATT
TCGAGCTGAACTACTAGTGACAGACATAAACGATCATTCTCCTGAGTTTCCTGAAAGAGAAATGACCCTG
AAAATCCCAGAAACTAGCTCCCTTGGGACTGTGTTTCCTCTGAAAAAAGCTCGGGACTTGGACGTGGGCA
GCAATAATGTTCAAAACTACAATATTTCTCCCAATTCTCATTTCCATGTTTCCACTCGCACCCGAGGGGA
TGGCAGGAAATACCCAGAGCTGGTGCTGGACACAGAACTGGATCGCGAGGAGCAGGCCGAGCTCAGATTA
ACCTTGACAGCGGTGGACGGTGGCTCTCCACCCCGATCTGGCACCGTCCAGATCCTCATCTTGGTCTTGG
ACGCCAATGACAATGCCCCGGAGTTTGTGCAGGCGCTCTACGAGGTGCAGGTCCCAGAGAACAGCCCAGT
AGGCTCCCTAGTTGTCAAGGTCTCTGCTAGGGATTTAGACACTGGGACAAATGGAGAGATATCATACTCC
CTTTATTACAGCTCTCAGGAGATAGACAAACCTTTTGAGCTAAGCAGCCTTTCAGGAGAAATTCGACTAA
TTAAAAAACTAGATTTTGAGACAATGTCTTCGTATGATCTAGATATAGAGGCATCTGATGGCGGGGGACT
TTCTGGAAAATGCTCTGTCTCTGTTAAGGTGCTGGATGTTAACGATAACTTCCCGGAACTAAGTATTTCA
TCACTTACCAGCCCTATTCCCGAGAATTCTCCAGAGACAGAAGTGGCCCTGTTTAGGATTAGAGACCGAG
ACTCTGGGGAAAATGGAAAAATGATTTGCTCAATTCAGGATGATGTTCCTTTTAAGCTAAAACCTTCTGT
TGAGAATTTCTACAGGCTGGTAACAGAAGGGGCGCTGGACAGAGAGACCAGAGCCGAGTACAACATCACC
ATCACCATCACAGACTTGGGGACTCCAAGGCTGAAAACCGAGCAGAGCATAACCGTGCTGGTGTCGGACG
TCAATGACAACGCCCCCGCCTTCACCCAAACCTCCTACACCCTGTTCGTCCGCGAGAACAACAGCCCCGC
CCTGCACATCGGCAGTGTCAGCGCCACAGACAGAGACTCGGGCACCAACGCCCAGGTCACCTACTCGCTG
CTGCCGCCCCGGGACCCGCACCTGCCCCTCACCTCCCTGGTCTCCATTAACACGGACAACGGCCACCTGT
TCGCTCTCCAGTCGCTGGACTACGAGGCCCTGCAGGCTTTCGAGTTCCGCGTGGGCGCCACAGACCGCGG
CTTCCCGGCGCTGAGCAGCGAGGCGCTGGTGCGAGTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTC
GTGCTGTACCCGCTGCAGAACGGCTCCGCGCCCTGCACCGAGCTGGTGCCCCGGGCGGCCGAGCCGGGCT
ACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTGTCGTACCAGCTGCT
CAAGGCCACGGAGCCCGGGCTGTTCGGCGTGTGGGCGCACAATGGCGAGGTGCGCACCGCCAGGCTGCTG
AGCGAGCGCGACGTGGCCAAGCACAGGCTAGTGGTGCTGGTCAAGGACAATGGCGAGCCTCCGCGCTCGG
CCACCGCCACGCTGCAAGTGCTCCTGGTGGACGGCTTCTCTCAGCCCTACCTGCCGCTCCCAGAGGCGGC
CCCGGCCCAAGCCCAGGCCGACTCGCTTACCGTCTACCTGGTGGTGGCATTGGCCTCGGTGTCTTCGCTC
TTCCTCTTCTCGGTGTTCCTGTTCGTGGCAGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCTCAGTGGGTC
GCTGCTCGGTGCCCGAGGGCCCCTTTCCAGGGCATCTGGTGGACGTGAGCGGCACCGGGACCCTTTCCCA
GAGCTACCAGTACGAGGTGTGTCTGACGGGAGGCTCTGAAAGTAATGATTTCAAGTTCTTGAAGCCTATA
TTCCCAAATATTGTAAGCCAGGACTCTAGGAGGAAATCAGAATTTCTAGAATAA

Translation (787 aa):
MEPAGERFPEQRQVLILLLLLEVTLAGWEPRRYSVMEETERGSFVANLANDLGLGVGELAERGARVVSED
NEQGLQLDLQTGQLILNEKLDREKLCGPTEPCIMHFQVLLKKPLEVFRAELLVTDINDHSPEFPEREMTL
KIPETSSLGTVFPLKKARDLDVGSNNVQNYNISPNSHFHVSTRTRGDGRKYPELVLDTELDREEQAELRL
TLTAVDGGSPPRSGTVQILILVLDANDNAPEFVQALYEVQVPENSPVGSLVVKVSARDLDTGTNGEISYS
LYYSSQEIDKPFELSSLSGEIRLIKKLDFETMSSYDLDIEASDGGGLSGKCSVSVKVLDVNDNFPELSIS
SLTSPIPENSPETEVALFRIRDRDSGENGKMICSIQDDVPFKLKPSVENFYRLVTEGALDRETRAEYNIT
ITITDLGTPRLKTEQSITVLVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSL
LPPRDPHLPLTSLVSINTDNGHLFALQSLDYEALQAFEFRVGATDRGFPALSSEALVRVLVLDANDNSPF
VLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWAHNGEVRTARLL
SERDVAKHRLVVLVKDNGEPPRSATATLQVLLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSL
FLFSVFLFVAVRLCRRSRAASVGRCSVPEGPFPGHLVDVSGTGTLSQSYQYEVCLTGGSESNDFKFLKPI
FPNIVSQDSRRKSEFLE


Links Key
 Links to:   History report
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  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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