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Report for CCDS42559.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42559.1 Public Homo sapiens 19 ZNF527 24 110 108 CCDS HistoryNCBI Gene:84503Re-query CCDS DB by CCDS ID:42559.1Re-query CCDS DB by GeneID:84503See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42559.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000436120.7 ENSP00000390179.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000436120.7Link to Ensembl Protein Viewer:ENSP00000390179.2Re-query CCDS DB by Nucleotide ID:ENST00000436120Re-query CCDS DB by Protein ID:ENSP00000390179
Original member Current member NCBI NM_032453.2 NP_115829.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032453.2Link to Protein Sequence:NP_115829.1Re-query CCDS DB by Nucleotide ID:NM_032453Re-query CCDS DB by Protein ID:NP_115829Link to BLAST:NP_115829.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_115829.1 609 Q8NB42-1 609 100% 0 0

Chromosomal Locations for CCDS 42559.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 37374199 37374231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37379120 37379246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37380277 37380372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 37388306 37389879 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1830 nt):
ATGGCTGTGGGGCTTTGTAAAGCCATGTCCCAGGGGTTGGTGACCTTCAGAGATGTGGCGCTAGACTTTT
CCCAAGAAGAGTGGGAATGGCTGAAGCCATCTCAGAAGGATTTATACAGAGATGTCATGTTGGAGAACTA
CAGGAACTTGGTATGGCTTGGACTCTCCATTTCTAAGCCCAACATGATCTCCTTACTGGAGCAAGGGAAG
GAACCGTGGATGGTGGAGAGAAAGATGTCACAGGGTCACTGTGCAGACTGGGAGTCTTGGTGTGAAATTG
AGGAATTATCTCCAAAATGGTTCATTGATGAAGATGAAATATCCCAGGAGATGGTAATGGAAAGGCTAGC
AAGTCATGGCCTTGAATGCTCCAGTTTCAGAGAAGCCTGGAAATATAAGGGTGAATTTGAGCTACATCAG
GGAAATGCGGAGAGGCATTTCATGCAAGTGACAGCTGTTAAGGAAATCTCTACTGGGAAAAGAGACAATG
AATTTAGTAATTCTGGGAGAAGCATACCCCTGAAATCAGTATTTTTAACACAACAGAAAGTTCCTACCAT
ACAGCAAGTACATAAATTTGATATTTATGATAAACTCTTCCCCCAAAATTCAGTCATAATTGAATATAAA
AGACTCCATGCTGAGAAGGAATCTTTGATAGGTAATGAATGTGAAGAATTCAACCAGAGTACGTACCTTA
GTAAAGATATAGGAATTCCTCCTGGGGAGAAACCTTATGAAAGTCATGATTTTTCAAAGCTCTTAAGTTT
CCACTCATTATTTACTCAACATCAGACCACTCATTTTGGAAAATTACCCCATGGATACGATGAATGTGGT
GATGCCTTTAGCTGTTACTCATTCTTTACTCAACCTCAGAGAATTCACAGTGGAGAAAAACCATATGCAT
GCAATGACTGTGGAAAAGCCTTTAGCCACGACTTCTTTCTCAGTGAACATCAAAGAACTCATATTGGGGA
GAAACCTTATGAATGTAAGGAATGTAACAAAGCTTTCAGACAGAGTGCTCACCTTGCTCAACATCAGAGG
ATCCACACTGGAGAGAAACCGTTTGCGTGCAATGAATGTGGGAAGGCCTTTAGCCGTTATGCCTTCCTTG
TTGAACATCAGAGAATTCACACAGGTGAGAAACCATATGAATGTAAAGAATGTAATAAAGCCTTCAGACA
GAGTGCTCACCTTAATCAACATCAGAGGATTCACACTGGAGAGAAACCCTATGAATGTAATCAGTGTGGA
AAAGCCTTCAGCAGACGCATAGCCCTTACTCTACATCAAAGAATTCACACAGGAGAGAAACCCTTCAAAT
GTAGTGAATGTGGGAAGACCTTTGGCTATCGCTCACACCTGAATCAACATCAGAGAATTCATACCGGAGA
AAAGCCCTATGAATGCATCAAATGTGGGAAGTTTTTTAGGACTGACTCACAACTTAATCGACATCATAGA
ATTCACACTGGAGAGAGACCATTTGAATGCAGTAAATGTGGGAAAGCCTTCAGTGATGCTTTAGTTCTAA
TTCACCATAAGAGAAGTCATGCAGGAGAGAAACCCTATGAATGTAACAAATGTGGAAAGGCCTTCAGTTG
TGGCTCATATCTTAATCAACATCAAAGAATTCATACTGGAGAGAAACCCTATGAATGTAGTGAATGTGGG
AAGGCTTTTCATCAGATCTTGTCCCTAAGACTACACCAGAGAATTCACGCTGGAGAAAAACCTTATAAAT
GTAACGAATGTGGGAATAATTTTAGCTGTGTCTCAGCCCTTAGACGACATCAGAGAATTCATAATAGAGA
AACGCTCTGA

Translation (609 aa):
MAVGLCKAMSQGLVTFRDVALDFSQEEWEWLKPSQKDLYRDVMLENYRNLVWLGLSISKPNMISLLEQGK
EPWMVERKMSQGHCADWESWCEIEELSPKWFIDEDEISQEMVMERLASHGLECSSFREAWKYKGEFELHQ
GNAERHFMQVTAVKEISTGKRDNEFSNSGRSIPLKSVFLTQQKVPTIQQVHKFDIYDKLFPQNSVIIEYK
RLHAEKESLIGNECEEFNQSTYLSKDIGIPPGEKPYESHDFSKLLSFHSLFTQHQTTHFGKLPHGYDECG
DAFSCYSFFTQPQRIHSGEKPYACNDCGKAFSHDFFLSEHQRTHIGEKPYECKECNKAFRQSAHLAQHQR
IHTGEKPFACNECGKAFSRYAFLVEHQRIHTGEKPYECKECNKAFRQSAHLNQHQRIHTGEKPYECNQCG
KAFSRRIALTLHQRIHTGEKPFKCSECGKTFGYRSHLNQHQRIHTGEKPYECIKCGKFFRTDSQLNRHHR
IHTGERPFECSKCGKAFSDALVLIHHKRSHAGEKPYECNKCGKAFSCGSYLNQHQRIHTGEKPYECSECG
KAFHQILSLRLHQRIHAGEKPYKCNECGNNFSCVSALRRHQRIHNRETL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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