NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42538.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42538.1 Public Homo sapiens 19 ZNF100 24 110 108 CCDS HistoryNCBI Gene:163227Re-query CCDS DB by CCDS ID:42538.1Re-query CCDS DB by GeneID:163227See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42538.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358296.11 ENSP00000351042.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000358296.11Link to Ensembl Protein Viewer:ENSP00000351042.5Re-query CCDS DB by Nucleotide ID:ENST00000358296Re-query CCDS DB by Protein ID:ENSP00000351042
Original member Current member NCBI NM_173531.4 NP_775802.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_173531.4Link to Protein Sequence:NP_775802.2Re-query CCDS DB by Nucleotide ID:NM_173531Re-query CCDS DB by Protein ID:NP_775802Link to BLAST:NP_775802.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_775802.2 542 Q8IYN0 542 100% 0 0

Chromosomal Locations for CCDS 42538.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 21726683 21727989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21744017 21744115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21744941 21745067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21765694 21765786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21767427 21767429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1629 nt):
ATGGATGACCCGAGGTATGGAATGTGTCCTCTCAAGGGAGCAAGTGGATGCCCTGGGGCTGAGAGGAGTC
TTCTGGTGCAGTCTTATTTTGAAAAGGGGCCATTGACGTTTAGGGATGTGGCCATAGAATTCTCTCTGGA
GGAGTGGCAATGCCTGGACAGTGCTCAGCAGGGTTTGTATAGGAAAGTGATGTTAGAGAACTACAGAAAC
CTGGTCTTCTTGGCAGGTATTGCTCTCACTAAGCCAGACCTGATCACCTGTCTGGAGCAAGGAAAAGAGC
CCTGGAATATAAAGAGACATGAGATGGTAGCCAAACCCCCAGTTATATGTTCTCATTTTCCCCAAGACCT
TTGGGCAGAGCAGGACATTAAAGATTCTTTTCAAGAAGCGATTCTGAAAAAATATGGAAAATATGGACAT
GACAATTTACAGTTACAAAAAGGCTGTAAAAGTGTGGATGAGTGTAAAGTGCACAAAGAACATGATAACA
AATTAAACCAGTGTTTGATAACTACCCAGAGCAACATATTTCAATGTGATCCATCTGCAAAAGTCTTTCA
TACATTTTCAAATTCAAACAGACATAAGATAAGACATACTAGAAAGAAACCTTTCAAATGTAAAAAATGT
GAAAAATCATTTTGCATGCTTTTACACCTAACTCAACATAAAAGATTTCATATTACAGAGAATTCCTACC
AATGTAAAGATTGTGGCAAAGCCTTCAACTGGTTCTCAACCCTTACTACACACAGGAGAATTCATACTGG
AGAGAAACCCTACAAATGTGAAGAATGTGGGAAAGCATTTAACCGGTCCTCACACCTTACTACACATAAG
ATAATTCATACTGGAGAGAAACCATACAGATGTGAAGAATGTGGGAAAGCTTTTAACCGGTCTTCACACC
TTACTACACATAAAAGAATTCATACTGGAGTGAAACCCTACAAATGTACAGAATGTGGCAAAGCTTTTAA
CCGGTCCTCACACCTTACTACACACAGGATAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGT
GGCAAAGCCTTTAACCAGTCCTCAACCCTTACTACACATAAGATAACTCATGCTGGAGAGAAACCTTACA
AATGTGAAGAATGTGGCAAAGCTTTTTACCGATTCTCATACCTTACTAAACATAAGACAAGTCATACTGG
AGAGAAATTCTACAAATGTGAAGAATGCGGCAAAGGCTTTAACTGGTCCTCAGCCCTCACTAAACATAAG
AGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAATGAGTCCTCAAACC
TTACTACCCATAAGATGATTCATACTGGAGAGAAACCCTACAAATGTGACGAATGTGGCAAAGCCTTTAA
CCGGTCCTCACAACTAACTGCACATAAGATGATTCATACTGGAGAGAAACCCTACAAATGTGAGGAATGT
GGCAAAGCTTTTAACCGATCCTCAACCCTTACTAAACATAAGATAACTCATACTGGAGAGAAATCTTACA
AATGGGAAGAATGTGGTAAAGACTTTAACCAGTCCCTAAGCCTTATTAAACAAAATAACTCATACTGGAG
AGAAACCCTACAAATGTGA

Translation (542 aa):
MDDPRYGMCPLKGASGCPGAERSLLVQSYFEKGPLTFRDVAIEFSLEEWQCLDSAQQGLYRKVMLENYRN
LVFLAGIALTKPDLITCLEQGKEPWNIKRHEMVAKPPVICSHFPQDLWAEQDIKDSFQEAILKKYGKYGH
DNLQLQKGCKSVDECKVHKEHDNKLNQCLITTQSNIFQCDPSAKVFHTFSNSNRHKIRHTRKKPFKCKKC
EKSFCMLLHLTQHKRFHITENSYQCKDCGKAFNWFSTLTTHRRIHTGEKPYKCEECGKAFNRSSHLTTHK
IIHTGEKPYRCEECGKAFNRSSHLTTHKRIHTGVKPYKCTECGKAFNRSSHLTTHRIIHTGEKPYKCEEC
GKAFNQSSTLTTHKITHAGEKPYKCEECGKAFYRFSYLTKHKTSHTGEKFYKCEECGKGFNWSSALTKHK
RIHTGEKPYKCEECGKAFNESSNLTTHKMIHTGEKPYKCDECGKAFNRSSQLTAHKMIHTGEKPYKCEEC
GKAFNRSSTLTKHKITHTGEKSYKWEECGKDFNQSLSLIKQNNSYWRETLQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH