NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42536.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42536.1 Public Homo sapiens 19 ZNF493 24 110 108 CCDS HistoryNCBI Gene:284443Re-query CCDS DB by CCDS ID:42536.1Re-query CCDS DB by GeneID:284443See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42536.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392288.7 ENSP00000376110.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000392288.7Link to Ensembl Protein Viewer:ENSP00000376110.2Re-query CCDS DB by Nucleotide ID:ENST00000392288Re-query CCDS DB by Protein ID:ENSP00000376110
Original member Current member NCBI NM_001076678.3 NP_001070146.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001076678.3Link to Protein Sequence:NP_001070146.1Re-query CCDS DB by Nucleotide ID:NM_001076678Re-query CCDS DB by Protein ID:NP_001070146Link to BLAST:NP_001070146.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001070146.1 774 Q6ZR52-2 774 100% 0 0

Chromosomal Locations for CCDS 42536.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 21397238 21397267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21405129 21405255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21405761 21405856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 21422913 21424984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2325 nt):
ATGCCAGGACCCCCTGAAAGCCTAGACATGGGGCCGTTGACATTTAGGGATGTGGCCATAGAATTCTCTC
TGGAGGAGTGGCAATGCCTGGACACTGCTCAGCAGGATTTGTATAGGAAAGTGATGTTAGAGAACTACAG
AAACCTGGTCTTCTTGGGTATTGCTGTCTCTAAGCCAGATCTGGTCACCTGTCTGGAGCAAGGAAAAGAT
CCCTGGAATATGAAGGGACACAGTACGGTAGTCAAACCCCCAGTTATATGTTCTCATTTTGCTGAAGACT
TTTGCCCAGGGCCAGGCATTAAAGATTCTTTTCAAAAAGTGATACTGAGAGAATATGTAAAATGTGGACA
TAAGGATTTACAGTTAAGAAAAGGATGTAAAAGTATGAATGAGTGTAATGTGCACAAAGAAGGTTATAAT
GAACTAAACCAGTATTTGACAACTACCCAGAGCAAAATATTTCAATGTGATAAATATGTGAAAGTCTTTC
ATAAACTTTTAAATTCAAATAGACATAACACAAAACATACTGGAAAGAAACCTTTCAAATGTAAAAAATG
TGGCAAATCATTTTGCATGCTTTTACACCTATGTCAGCATAAAAGAATTCATATTAGAGAGAATTCTTAC
CGATGTGAAGAATGTGGCAAAGCCTTTATCTGGTTTTCAACCCTTACTAGACACAGGAGAGTTCATACTG
GAGAGAAATCCTACAAATATGAATGTGGCAAATCTTTTAACCAGGACTCAAACCTTACTACACATAAGAG
AATTCATACTGGACAGAAACCCTACAAATGTGAAGAATGTGGCACATCTTTCTACCAATTCTCATACCTT
ACTAGGCATAAGCTAATTCATACTAGAGAGAAACCCTATAAATGTGAACAATATGGCAAAACTTTTAACC
AATCTTCAACCCTTACTGGACATAAGATAATTCATAATGGAGAAAAACCCTATAAATGTGAAGAATGTGG
CAAAGCCTTTAGTATTTTCTCAACCCCTACTAAACATAAGATAATTCACACTGAAGAGAAATCCCACAGA
TGTGAAGAATATTGCAAAGCTTATAAGGAGTCCTCACACCTTACTACACATAAAAGAATTCATACTGGAG
AGAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAGTATTTTCTCAACCCTTACTAAACATAAGAT
AATTCACACTGAAGAGAAATCCCACAGATGTGAAGAATGTGGCAAAGCTTATAAGGAGTCTTCACACCTT
ACTACACATAAAAGAATTCATACTGGAGAGAAACCCTACAAATGTGAAGAATGTGGCAAAACCTTTAGTG
TATTCTCAATTCTTACTAAACATAAAATAATTCATACAGAAGAGAAACCCTACAAATGTGAAGAATGTGG
CAAAGCTTTTAAACGATCTTCAACCCTTACTAAACATAGGATAATTCATACTGAAGAGAAACCCTACAAA
TGTGAAGAATGTGGCAAAGCTTTTAACCAATCTTCAACCCTTAGTATACATAAAATAATTCATACTGGAG
AAAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAAACGATCTTCAACCCTTACTATACATAAAAT
GATTCACACTGGAGAAAAACCCTACAAATGTGAAGAATGTGGCAAAGCTTTTAATCGGTCCTCACACCTT
ACTACACATAAGAGAATTCATACTGGACACAAACCCTACAAATGTAAAGAATGTGGCAAATCCTTTAGTG
TATTCTCAACCCTTACTAAACACAAGATAATTCATACTGATAAGAAACCCTACAAATGTGAAGAATGTGG
CAAAGCTTTTAACCGATCTTCAATCCTTAGTATACATAAGAAAATTCATACTGGAGAAAAACCCTACAAA
TGTGAAGAATGTGGCAAAGCTTTTAAGCGGTCCTCACACCTCGCTGGGCACAAGCAAATTCATAGTGTAC
AAAAACCCTACAAATGTGAAGAATGTGGCAAAGCCTTTAGTATATTCTCAACCCTTACTAAACATAAGAT
AATTCATACTGAAGAGAAACCCTACAAATGTGAAAAATGTGGCAAAACTTTCTACCGATTCTCAAACCTT
AATACGCATAAGATAATTCATACTGGAGAGAAACCTTGCAAATGTGAAGAATGTGGCAAAGCTTTTAACC
ATTCCTCAAACCTTATTAAACATAAGCTAATTCATACTGGAGACAAACCCTACAAATGTGAAGCATGTGG
CAAAGCTTTTAGGCGGTCTTCACATCTTAGTAGACATAAGATAATTCATATTGGAATTCATACTGAAGAG
ACTGTACAAAAGTGA

Translation (774 aa):
MPGPPESLDMGPLTFRDVAIEFSLEEWQCLDTAQQDLYRKVMLENYRNLVFLGIAVSKPDLVTCLEQGKD
PWNMKGHSTVVKPPVICSHFAEDFCPGPGIKDSFQKVILREYVKCGHKDLQLRKGCKSMNECNVHKEGYN
ELNQYLTTTQSKIFQCDKYVKVFHKLLNSNRHNTKHTGKKPFKCKKCGKSFCMLLHLCQHKRIHIRENSY
RCEECGKAFIWFSTLTRHRRVHTGEKSYKYECGKSFNQDSNLTTHKRIHTGQKPYKCEECGTSFYQFSYL
TRHKLIHTREKPYKCEQYGKTFNQSSTLTGHKIIHNGEKPYKCEECGKAFSIFSTPTKHKIIHTEEKSHR
CEEYCKAYKESSHLTTHKRIHTGEKPYKCEECGKAFSIFSTLTKHKIIHTEEKSHRCEECGKAYKESSHL
TTHKRIHTGEKPYKCEECGKTFSVFSILTKHKIIHTEEKPYKCEECGKAFKRSSTLTKHRIIHTEEKPYK
CEECGKAFNQSSTLSIHKIIHTGEKPYKCEECGKAFKRSSTLTIHKMIHTGEKPYKCEECGKAFNRSSHL
TTHKRIHTGHKPYKCKECGKSFSVFSTLTKHKIIHTDKKPYKCEECGKAFNRSSILSIHKKIHTGEKPYK
CEECGKAFKRSSHLAGHKQIHSVQKPYKCEECGKAFSIFSTLTKHKIIHTEEKPYKCEKCGKTFYRFSNL
NTHKIIHTGEKPCKCEECGKAFNHSSNLIKHKLIHTGDKPYKCEACGKAFRRSSHLSRHKIIHIGIHTEE
TVQK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH