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Report for CCDS42530.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42530.1 Public Homo sapiens 19 YJEFN3 24 110 108 CCDS HistoryNCBI Gene:374887Re-query CCDS DB by CCDS ID:42530.1Re-query CCDS DB by GeneID:374887See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42530.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000514277.6 ENSP00000426964.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000514277.6Link to Ensembl Protein Viewer:ENSP00000426964.1Re-query CCDS DB by Nucleotide ID:ENST00000514277Re-query CCDS DB by Protein ID:ENSP00000426964
Original member Current member NCBI NM_198537.4 NP_940939.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_198537.4Link to Protein Sequence:NP_940939.2Re-query CCDS DB by Nucleotide ID:NM_198537Re-query CCDS DB by Protein ID:NP_940939Link to BLAST:NP_940939.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_940939.2 299 A6XGL0-1 299 100% 0 0

Chromosomal Locations for CCDS 42530.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 19528933 19528991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19529364 19529513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19532632 19532740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19535034 19535144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19535337 19535450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19535529 19535679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 19537319 19537524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGAGCAGCGCAGCCGGCCCAGACCCGTCGGAGGCGCCCGAAGAGCGGCATTTCCTCAGGGCCTTGGAGC
TGCAGCCCCCACTTGCCGACATGGGAAGAGCGGAGCTTAGCTCAAATGCTACCACCTCCCTTGTCCAGAG
GAGGAAACAGGCCTGGGGAAGGCAGTCATGGCTAGAGCAGATTTGGAACGCAGGGCCTGTTTGCCAGAGC
ACCGCGGAGGCAGCCGCCCTGGAGCGGGAGCTGCTGGAGGATTATCGCTTTGGGCGGCAGCAGCTCGTGG
AGCTGTGCGGTCATGCTAGTGCCGTGGCTGTGACCAAGGCGTTCCCGTTGCCCGCTCTCTCCCGGAAGCA
GAGGACGGTGCTGGTCGTGTGTGGCCCGGAGCAGAACGGGGCAGTGGGGCTGGTCTGTGCCCGGCACCTG
CGGGTGTTTGAGTATGAACCCACCATCTTCTACCCCACACGCTCGCTGGACCTGCTGCATCGGGACCTGA
CCACCCAGTGCGAGAAGATGGACATCCCCTTCCTGAGCTACCTGCCCACTGAGGTGCAGCTCATTAACGA
AGCCTATGGGCTGGTGGTGGATGCCGTACTGGGCCCCGGCGTGGAGCCGGGCGAGGTCGGGGGCCCCTGC
ACCCGCGCGCTGGCCACGCTCAAGCTGCTGTCCATCCCCCTCGTGAGCCTGGACATCCCCTCAGGCTGGG
ACGCAGAGACCGGCAGCGATTCGGAGGACGGGCTGCGGCCTGACGTGCTGGTGTCTCTCGCGGCGCCCAA
GCGCTGCGCTGGCCGCTTCTCCGGGCGCCACCACTTCGTGGCCGGCAGGTTCGTGCCCGATGACGTGCGC
CGCAAGTTCGCTCTGCGCCTGCCGGGATACACGGGCACCGACTGCGTCGCGGCACTGTGA

Translation (299 aa):
MSSAAGPDPSEAPEERHFLRALELQPPLADMGRAELSSNATTSLVQRRKQAWGRQSWLEQIWNAGPVCQS
TAEAAALERELLEDYRFGRQQLVELCGHASAVAVTKAFPLPALSRKQRTVLVVCGPEQNGAVGLVCARHL
RVFEYEPTIFYPTRSLDLLHRDLTTQCEKMDIPFLSYLPTEVQLINEAYGLVVDAVLGPGVEPGEVGGPC
TRALATLKLLSIPLVSLDIPSGWDAETGSDSEDGLRPDVLVSLAAPKRCAGRFSGRHHFVAGRFVPDDVR
RKFALRLPGYTGTDCVAAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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