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Report for CCDS42447.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42447.1 Public Homo sapiens 18 ZNF236 24 110 108 CCDS HistoryNCBI Gene:7776Re-query CCDS DB by CCDS ID:42447.1Re-query CCDS DB by GeneID:7776See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42447.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000253159.12 ENSP00000253159.8 Accepted alive Link to Ensembl Transcript Viewer:ENST00000253159.12Link to Ensembl Protein Viewer:ENSP00000253159.8Re-query CCDS DB by Nucleotide ID:ENST00000253159Re-query CCDS DB by Protein ID:ENSP00000253159
Original member Current member NCBI NM_007345.4 NP_031371.3 Accepted alive Link to Nucleotide Sequence:NM_007345.4Link to Protein Sequence:NP_031371.3Re-query CCDS DB by Nucleotide ID:NM_007345Re-query CCDS DB by Protein ID:NP_031371Link to BLAST:NP_031371.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031371.3 1845 Q9UL36-1 1845 100% 0 0

Chromosomal Locations for CCDS 42447.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 76824358 76824406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76849526 76849668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76851775 76851939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76868685 76868863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76871701 76871825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76875492 76875664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76878009 76878152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76880113 76880316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76881284 76881512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76895013 76895285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76899019 76899222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76904380 76904521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76905155 76905415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76908320 76908573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76910068 76910169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76910660 76910811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76912244 76912347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76913747 76913898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76915647 76915859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76919776 76920058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76923071 76923174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76925189 76925554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76927037 76927182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76927277 76927517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76927927 76928106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76937156 76937343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76947521 76947652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76955985 76956182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76959687 76959816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76960679 76960855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 76968215 76968339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5538 nt):
ATGGGCCTTTGTGGGCTGCTGGAGAGATGTTGGCTGCACCATGACCCAGATGGAGTTTTAACATTGAATG
CGGAGAACACTAATTATGCCTATCAAGTTCCAAACTTCCATAAATGTGAAATCTGTCTACTATCTTTTCC
AAAAGAATCCCAGTTTCAACGCCACATGAGGGATCACGAGCGAAATGACAAGCCACATCGATGTGACCAG
TGCCCCCAAACATTTAATGTTGAATTCAACCTGACACTTCATAAATGCACCCACAGCGGGGAAGATCCTA
CCTGCCCTGTGTGTAACAAGAAATTCTCCAGAGTGGCTAGTCTCAAAGCGCATATTATGCTACATGAAAA
GGAAGAGAATCTCATCTGTTCTGAGTGTGGGGATGAGTTTACTCTGCAGAGTCAGCTGGCCGTGCACATG
GAGGAGCACCGCCAGGAGCTGGCTGGAACCCGGCAGCATGCCTGCAAGGCCTGCAAGAAAGAGTTCGAGA
CCTCCTCGGAGCTGAAGGAACACATGAAGACTCATTACAAAATTAGGGTATCAAGTACAAGGTCTTATAA
CCGGAATATCGACAGAAGTGGATTCACGTATTCGTGTCCGCACTGTGGAAAGACGTTTCAAAAGCCAAGC
CAGTTAACGCGACACATTAGGATACACACAGGTGAAAGGCCGTTCAAATGTAGTGAATGTGGAAAGGCTT
TTAACCAGAAGGGGGCACTGCAGACCCACATGATCAAGCACACAGGTGAAAAACCCCATGCCTGTGCCTT
CTGTCCTGCCGCCTTCTCTCAGAAAGGGAATCTTCAGTCGCACGTGCAGCGAGTCCACTCAGAGGTCAAG
AATGGTCCTACCTATAACTGTACAGAATGTAGTTGTGTATTTAAAAGTTTAGGCAGCTTAAACACGCATA
TCAGCAAGATGCATATGGGTGGGCCACAGAATTCAACAAGTTCTACAGAGACTGCTCATGTTTTAACGGC
CACACTTTTTCAGACGTTACCTCTTCAACAGACGGAAGCCCAAGCCACGTCGGCCTCAAGCCAGCCGAGC
TCCCAGGCGGTGAGCGACGTCATCCAGCAGCTCCTGGAGCTCTCAGAGCCGGCGCCGGTGGAGTCGGGGC
AGTCCCCGCAGCCTGGGCAGCAGCTGAGCATCACAGTGGGCATCAACCAGGACATTTTACAGCAAGCCTT
AGAAAACAGTGGGCTGTCTTCAATTCCAGCTGCAGCACATCCTAATGACTCCTGCCATGCCAAGACCTCT
GCACCACACGCTCAAAACCCAGATGTTTCCAGCGTTTCAAATGAGCAGACGGACCCCACAGACGCAGAGC
AAGAAAAAGAACAGGAAAGCCCGGAGAAACTGGATAAAAAAGAAAAAAAAATGATAAAGAAGAAGTCACC
GTTTCTACCTGGCTCCATCCGCGAGGAGAACGGCGTGCGCTGGCATGTGTGTCCCTACTGCGCCAAGGAG
TTCCGCAAGCCCAGCGACCTGGTCCGCCACATCCGCATCCACACCCACGAGAAGCCCTTCAAGTGCCCGC
AGTGCTTCCGCGCCTTCGCCGTGAAGAGCACGCTGACAGCGCACATCAAGACGCACACCGGCATCAAGGC
GTTCAAGTGCCAGTACTGCATGAAGAGCTTCTCCACCTCTGGCAGCCTCAAGGTGCACATTCGCCTGCAC
ACAGGAGTTAGACCTTTTGCTTGTCCTCACTGTGACAAAAAATTTCGAACCTCAGGCCATAGGAAGACTC
ACATTGCTTCCCACTTTAAACATACGGAATTAAGGAAAATGAGGCACCAGCGTAAACCTGCAAAGGTCCG
TGTTGGCAAGACGAATATTCCAGTCCCTGATATTCCTTTGCAGGAACCAATCCTCATAACTGACTTAGGT
CTCATCCAGCCCATTCCAAAAAACCAGTTTTTCCAAAGCTATTTCAATAATAATTTTGTCAATGAAGCAG
ATAGACCATACAAGTGTTTTTACTGTCATCGTGCATATAAAAAATCTTGCCACCTTAAACAACACATCAG
ATCCCATACAGGTGAAAAACCTTTTAAATGTTCTCAGTGTGGAAGAGGCTTTGTTTCTGCAGGCGTGCTC
AAAGCACACATCAGAACACACACAGGACTGAAATCTTTCAAGTGTCTGATATGTAATGGGGCTTTCACTA
CTGGTGGCAGCTTACGGCGACACATGGGTATCCACAACGACCTTCGTCCCTATATGTGTCCCTATTGCCA
AAAAACATTTAAGACTTCACTAAATTGCAAAAAGCACATGAAAACCCACAGATATGAGCTTGCCCAGCAG
CTCCAACAGCATCAGCAGGCAGCCTCGATAGATGACAGCACTGTAGACCAGCAGAGCATGCAGGCCTCCA
CTCAAATGCAGGTGGAGATCGAGAGCGACGAGCTGCCGCAGACGGCAGAGGTGGTCGCAGCGAACCCCGA
GGCCATGCTGGACCTGGAGCCTCAGCATGTGGTGGGCACGGAGGAAGCAGGGCTGGGCCAGCAGTTGGCA
GATCAGCCCCTGGAAGCAGATGAAGATGGGTTTGTGGCTCCACAGGACCCTCTGCGAGGGCACGTAGACC
AGTTTGAAGAGCAGAGCCCTGCGCAACAGTCCTTCGAACCAGCAGGGCTACCCCAAGGTTTTACAGTGAC
TGATACGTACCATCAGCAGCCTCAGTTTCCACCTGTCCAACAGCTACAGGATTCCAGCACACTTGAGTCT
CAGGCCCTCTCCACAAGCTTCCACCAGCAGAGCTTGCTGCAGGCTCCCAGCTCTGATGGGATGAATGTAA
CAACTCGCTTGATTCAGGAGTCATCCCAAGAGGAACTGGACCTGCAGGCACAAGGTTCCCAGTTTCTGGA
GGACAACGAGGACCAGAGCAGGCGCTCTTACAGGTGTGACTATTGCAACAAAGGCTTTAAGAAGTCCAGC
CACCTGAAGCAGCATGTGCGGTCGCACACCGGGGAAAAGCCCTACAAGTGCAAGCTCTGTGGACGCGGCT
TTGTTTCCTCTGGGGTCCTCAAGTCCCACGAGAAGACACACACAGGAGTGAAGGCGTTCAGCTGCAGTGT
GTGCAATGCTTCCTTCACCACCAATGGCAGCCTCACCCGGCACATGGCCACACATATGAGCATGAAGCCT
TATAAGTGTCCGTTTTGTGAGGAGGGTTTCCGAACTACAGTGCATTGTAAAAAGCACATGAAGAGACACC
AAACAGTCCCCTCTGCTGTGTCAGCCACTGGAGAGACAGAAGGAGGAGACATTTGTATGGAGGAAGAGGA
AGAACATTCTGACAGAAATGCATCACGGAAGTCTCGTCCTGAGGTCATCACTTTCACGGAGGAGGAGACA
GCCCAGTTAGCCAAGATCCGGCCGCAGGAGAGCGCCACGGTGTCAGAGAAGGTCCTGGTGCAGTCCGCGG
CAGAAAAGGACCGCATCAGTGAGCTGAGGGACAAGCAGGCGGAGCTGCAGGACGAGCCCAAGCACGCCAA
CTGCTGCACATACTGCCCCAAGAGCTTCAAGAAACCTAGCGACCTGGTGAGGCATGTTCGAATCCATACT
GGAGAAAAGCCATACAAATGTGATGAATGTGGAAAGAGTTTTACTGTGAAATCCACTCTCGATTGTCATG
TGAAGACTCACACAGGTCAGAAGCTCTTCAGCTGTCACGTCTGCAGCAACGCCTTCTCCACGAAGGGAAG
TCTGAAGGTCCACATGCGCCTGCACACGGGAGCCAAGCCCTTCAAATGCCCGCATTGCGAGCTGCGTTTC
CGTACCTCGGGTAGAAGAAAGACACACATGCAGTTTCATTATAAACCAGACCCAAAGAAGGCCAGAAAGC
CTATGACTCGAAGCTCATCGGAAGGACTGCAGCCTGTAAACCTCCTCAACTCCTCCTCTACTGACCCAAA
CGTGTTTATCATGAACAACTCTGTTCTAACAGGACAGTTTGATCAGAATCTGCTGCAACCAGGACTGGTG
GGCCAAGCTATTCTCCCTGCCTCTGTGTCAGCTGGGGGTGACCTGACCGTGTCTCTGACAGATGGGAGCC
TGGCTACCCTAGAAGGCATCCAGTTACAGTTGGCTGCTAACTTGGTTGGACCAAATGTACAGATTTCTGG
AATCGATGCTGCCAGCATTAATAACATTACGTTGCAGATTGATCCAAGCATTCTGCAGCAGACGCTACAG
CAGGGCAACCTATTGGCTCAGCAGCTCACGGGGGAGCCTGGCCTGGCCCCACAGAACAGCTCTCTCCAGA
CATCGGACAGCACGGTCCCTGCCAGTGTTGTCATCCAGCCCATCTCAGGCCTGTCCTTACAGCCCACAGT
GACCTCTGCGAACCTGACCATAGGCCCGCTGTCTGAGCAGGATTCAGTGCTGACCACTAACAGCAGTGGG
ACCCAAGACCTCACTCAAGTGATGACTTCGCAAGGTCTAGTGTCCCCCTCCGGCGGTCCCCACGAGATCA
CCCTGACCATTAACAACTCCAGCCTGAGCCAGGTCCTGGCACAGGCCGCTGGGCCCACTGCCACGTCTTC
CTCGGGGTCTCCACAGGAAATTACCCTGACTATCTCCGAACTTAACACTACAAGCGGAAGCCTTCCTTCA
ACAACACCGATGTCTCCATCGGCCATCTCGACTCAGAACCTGGTCATGTCCTCGTCGGGCGTGGGAGGTG
ACGCTAGTGTCACGCTGACGCTGGCCGATACTCAGGGTATGCTATCTGGAGGCCTGGACACTGTCACACT
CAACATCACCTCTCAGGGTCAGCAGTTCCCAGCGCTCCTCACGGATCCCTCTCTCTCGGGCCAGGGTGGA
GCAGGCTCGCCGCAAGTCATACTAGTGAGCCACACGCCACAGTCAGCGTCTGCTGCTTGTGAAGAAATAG
CCTACCAGGTAGCTGGCGTCTCTGGGAACCTGGCCCCGGGCAACCAGCCAGAGAAGGAGGGCCGGGCGCA
CCAGTGCCTGGAGTGTGACCGCGCCTTCTCATCGGCGGCGGTGCTCATGCACCACAGCAAGGAGGTGCAT
GGCCGGGAGCGCATCCACGGCTGCCCCGTGTGCAGGAAGGCCTTCAAGCGCGCCACGCACCTCAAGGAGC
ACATGCAGACACACCAGGCCGGCCCCTCTTTGAGCTCCCAGAAGCCAAGAGTGTTTAAATGTGACACTTG
TGAGAAGGCATTTGCCAAACCAAGCCAGCTGGAGCGCCACAGCCGCATACATACAGGGGAGCGGCCGTTC
CATTGCACGCTTTGTGAGAAAGCCTTCAACCAGAAGAGTGCGCTGCAGGTGCACATGAAGAAGCACACGG
GGGAGCGGCCCTACAAGTGTGCCTACTGCGTCATGGGCTTCACGCAGAAGAGCAACATGAAGCTGCACAT
GAAGCGGGCGCACAGCTATGCTGGAGCTCTGCAGGAGTCTGCAGGTCACCCGGAGCAGGACGGGGAGGAG
CTGAGCCGGACCCTCCACCTGGAGGAGGTGGTGCAGGAGGCCGCCGGCGAGTGGCAGGCCCTCACCCACG
TCTTCTGA

Translation (1845 aa):
MGLCGLLERCWLHHDPDGVLTLNAENTNYAYQVPNFHKCEICLLSFPKESQFQRHMRDHERNDKPHRCDQ
CPQTFNVEFNLTLHKCTHSGEDPTCPVCNKKFSRVASLKAHIMLHEKEENLICSECGDEFTLQSQLAVHM
EEHRQELAGTRQHACKACKKEFETSSELKEHMKTHYKIRVSSTRSYNRNIDRSGFTYSCPHCGKTFQKPS
QLTRHIRIHTGERPFKCSECGKAFNQKGALQTHMIKHTGEKPHACAFCPAAFSQKGNLQSHVQRVHSEVK
NGPTYNCTECSCVFKSLGSLNTHISKMHMGGPQNSTSSTETAHVLTATLFQTLPLQQTEAQATSASSQPS
SQAVSDVIQQLLELSEPAPVESGQSPQPGQQLSITVGINQDILQQALENSGLSSIPAAAHPNDSCHAKTS
APHAQNPDVSSVSNEQTDPTDAEQEKEQESPEKLDKKEKKMIKKKSPFLPGSIREENGVRWHVCPYCAKE
FRKPSDLVRHIRIHTHEKPFKCPQCFRAFAVKSTLTAHIKTHTGIKAFKCQYCMKSFSTSGSLKVHIRLH
TGVRPFACPHCDKKFRTSGHRKTHIASHFKHTELRKMRHQRKPAKVRVGKTNIPVPDIPLQEPILITDLG
LIQPIPKNQFFQSYFNNNFVNEADRPYKCFYCHRAYKKSCHLKQHIRSHTGEKPFKCSQCGRGFVSAGVL
KAHIRTHTGLKSFKCLICNGAFTTGGSLRRHMGIHNDLRPYMCPYCQKTFKTSLNCKKHMKTHRYELAQQ
LQQHQQAASIDDSTVDQQSMQASTQMQVEIESDELPQTAEVVAANPEAMLDLEPQHVVGTEEAGLGQQLA
DQPLEADEDGFVAPQDPLRGHVDQFEEQSPAQQSFEPAGLPQGFTVTDTYHQQPQFPPVQQLQDSSTLES
QALSTSFHQQSLLQAPSSDGMNVTTRLIQESSQEELDLQAQGSQFLEDNEDQSRRSYRCDYCNKGFKKSS
HLKQHVRSHTGEKPYKCKLCGRGFVSSGVLKSHEKTHTGVKAFSCSVCNASFTTNGSLTRHMATHMSMKP
YKCPFCEEGFRTTVHCKKHMKRHQTVPSAVSATGETEGGDICMEEEEEHSDRNASRKSRPEVITFTEEET
AQLAKIRPQESATVSEKVLVQSAAEKDRISELRDKQAELQDEPKHANCCTYCPKSFKKPSDLVRHVRIHT
GEKPYKCDECGKSFTVKSTLDCHVKTHTGQKLFSCHVCSNAFSTKGSLKVHMRLHTGAKPFKCPHCELRF
RTSGRRKTHMQFHYKPDPKKARKPMTRSSSEGLQPVNLLNSSSTDPNVFIMNNSVLTGQFDQNLLQPGLV
GQAILPASVSAGGDLTVSLTDGSLATLEGIQLQLAANLVGPNVQISGIDAASINNITLQIDPSILQQTLQ
QGNLLAQQLTGEPGLAPQNSSLQTSDSTVPASVVIQPISGLSLQPTVTSANLTIGPLSEQDSVLTTNSSG
TQDLTQVMTSQGLVSPSGGPHEITLTINNSSLSQVLAQAAGPTATSSSGSPQEITLTISELNTTSGSLPS
TTPMSPSAISTQNLVMSSSGVGGDASVTLTLADTQGMLSGGLDTVTLNITSQGQQFPALLTDPSLSGQGG
AGSPQVILVSHTPQSASAACEEIAYQVAGVSGNLAPGNQPEKEGRAHQCLECDRAFSSAAVLMHHSKEVH
GRERIHGCPVCRKAFKRATHLKEHMQTHQAGPSLSSQKPRVFKCDTCEKAFAKPSQLERHSRIHTGERPF
HCTLCEKAFNQKSALQVHMKKHTGERPYKCAYCVMGFTQKSNMKLHMKRAHSYAGALQESAGHPEQDGEE
LSRTLHLEEVVQEAAGEWQALTHVF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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