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Report for CCDS42444.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42444.1 Public Homo sapiens 18 NETO1 24 110 108 CCDS HistoryNCBI Gene:81832Re-query CCDS DB by CCDS ID:42444.1Re-query CCDS DB by GeneID:81832See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 42444.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397929.5 ENSP00000381024.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397929.5Link to Ensembl Protein Viewer:ENSP00000381024.1Re-query CCDS DB by Nucleotide ID:ENST00000397929Re-query CCDS DB by Protein ID:ENSP00000381024
Original member Current member NCBI NM_138999.2 NP_620552.1 Accepted alive Link to Nucleotide Sequence:NM_138999.2Link to Protein Sequence:NP_620552.1Re-query CCDS DB by Nucleotide ID:NM_138999Re-query CCDS DB by Protein ID:NP_620552Link to BLAST:NP_620552.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_620552.1 156 Q8TDF5-1 156 100% 0 0

Chromosomal Locations for CCDS 42444.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 72835315 72835319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 72858826 72859074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 72864808 72864945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 72865188 72865241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 72865573 72865597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (471 nt):
ATGCTGGCAGAGCCATTCCCTAAGGTTGTAGCAAGTTTAATCATCCTCCATTTGTCTGGGGCAACCAAGA
AAGGAACAGAAAAGCAAACCACCTCAGAAACACAGAAGTCAGTGCAGTGTGGAACTTGGACAAAACATGC
AGAGGGAGGTATCTTTACCTCTCCCAACTATCCCAGCAAGTATCCCCCTGACCGGGAATGCATCTACATC
ATAGAAGCCGCTCCAAGACAGTGCATTGAACTTTACTTTGATGAAAAGTACTCTATTGAACCGTCTTGGG
AGTGCAAATTTGATCATATTGAAGTTCGAGATGGACCTTTTGGCTTTTCTCCAATAATTGGACGTTTCTG
TGGACAACAAAATCCACCTGTCATAAAATCCAGTGGAAGATTTCTATGGATTAAATTTTTTGCTGATGGA
GAGCTGGAATCTATGGGATTTTCAGCTCGATACAATTTCACACCTGAATAA

Translation (156 aa):
MLAEPFPKVVASLIILHLSGATKKGTEKQTTSETQKSVQCGTWTKHAEGGIFTSPNYPSKYPPDRECIYI
IEAAPRQCIELYFDEKYSIEPSWECKFDHIEVRDGPFGFSPIIGRFCGQQNPPVIKSSGRFLWIKFFADG
ELESMGFSARYNFTPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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