NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42427.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42427.1 Public Homo sapiens 18 ZSCAN30 24 110 108 CCDS HistoryNCBI Gene:100101467Re-query CCDS DB by CCDS ID:42427.1Re-query CCDS DB by GeneID:100101467See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42427.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333206.10 ENSP00000329738.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333206.10Link to Ensembl Protein Viewer:ENSP00000329738.4Re-query CCDS DB by Nucleotide ID:ENST00000333206Re-query CCDS DB by Protein ID:ENSP00000329738
Original member Current member EBI ENST00000420878.7 ENSP00000392371.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000420878.7Link to Ensembl Protein Viewer:ENSP00000392371.2Re-query CCDS DB by Nucleotide ID:ENST00000420878Re-query CCDS DB by Protein ID:ENSP00000392371
Original member Current member NCBI NM_001112734.4 NP_001106205.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001112734.4Link to Protein Sequence:NP_001106205.1Re-query CCDS DB by Nucleotide ID:NM_001112734Re-query CCDS DB by Protein ID:NP_001106205Link to BLAST:NP_001106205.1
Original member Current member NCBI NM_001166012.3 NP_001159484.1 Accepted alive Link to Nucleotide Sequence:NM_001166012.3Link to Protein Sequence:NP_001159484.1Re-query CCDS DB by Nucleotide ID:NM_001166012Re-query CCDS DB by Protein ID:NP_001159484Link to BLAST:NP_001159484.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106205.1 494 Q86W11-1 494 100% 0 0
NP_001159484.1 494 Q86W11-1 494 100% 0 0

Chromosomal Locations for CCDS 42427.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 35253450 35254381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35263513 35263657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 35263945 35264352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1485 nt):
ATGTCAGGAGAGGCCACAGTCTTGGCCTACCATGCTCCAGAAGAACAGGAAGGACTTCTAGTTGTCAAGG
TTGAAGAAGAAAATTATGTTTTGGACCAGGACTTTGGCCTTCAGGAAAACCCCTGGAGCCAAGAGGTATT
CCGGCAGAAGTTCAGGCAGTTTAGTTACTCTGACTCCACTGGCCCTCGGGAGGCTCTGAGCCGGCTGCGA
GAGCTTTGCTGTCAGTGGTTGAGGCCGGAGGTGCACTCCAAGGAGCAGATCCTGGAGCTGCTGATGTTGG
AGCAGTTCCTGGCCATCCTTCCTGAGGAGCTGCAAGCTTGGCTGCGAGAGCATCGGCCAGAGAATGGAGA
GGAAGCTGTGACTATGCTGGAGGAGCTGGAAAAAGAACTGGAGGAGCCAAGGCAACAGGACACAACTCAT
GGCCAAGAAATGTTCTGGCAGGAAATGACATCCACAGGAGCACTGAAGTCTCTGTCTCTGAATAGCCCGG
TGCAGCCCTTAGAGAACCAGTGCAAGACTGAGACTCAGGAGTCCCAGGCTTTCCAGGAGAGAGATGGCAG
GATGGTGGCTGGCAAAGTGTTGATGGCAAAGCAAGAAATTGTTGAATGTGTAGCCTCAGCAGCTATGATA
TCGCCGGGAAAACTTCCTGGAGAAACACATTCCCAACGGATAGCTGAAGAAGCTTTGGGAGGTCTGGACA
ACTCTAAGAAGCAAAAGGGAAATGCTGCAGGGAACAAAATCAGTCAGCTTCCTTCCCAGGACAGACATTT
CAGTCTGGCAACCTTCAACAGAAGAATCCCCACAGAACACAGTGTCCTTGAATCTCATGAGAGTGAAGGA
AGTTTCAGTATGAATTCAAATGATATTACACAACAGAGCGTTGACACTAGGGAAAAGCTCTATGAGTGCT
TTGACTGTGGGAAGGCCTTTTGCCAGAGCTCAAAGCTGATTAGACATCAGAGAATTCATACTGGAGAGAG
ACCTTATGCATGTAAAGAATGTGGCAAAGCCTTCAGTTTGAGCTCAGACCTTGTTAGACATCAGAGAATT
CATAGTGGTGAAAAACCCTATGAATGTTGTGAATGTGGAAAAGCCTTCAGGGGCAGTTCAGAGCTCATCA
GGCATCGGAGAATCCACACTGGAGAGAAGCCTTATGAATGTGGAGAATGTGGGAAGGCCTTCAGCCGGAG
CTCAGCCCTTATTCAGCATAAGAAAATTCACACTGGAGATAAAAGCTATGAATGTATTGCATGTGGTAAG
GCTTTTGGTAGGAGTTCTATCCTTATTGAACATCAAAGAATTCACACTGGAGAGAAACCTTATGAATGTA
ATGAATGTGGAAAATCCTTCAATCAGAGCTCAGCCCTCACCCAGCACCAGAGAATTCACACTGGAGAGAA
GCCTTATGAATGTAGTGAATGTAGAAAAACATTTAGGCATAGGTCAGGCCTTATGCAGCATCAGAGAACA
CACACCAGAGTTTAA

Translation (494 aa):
MSGEATVLAYHAPEEQEGLLVVKVEEENYVLDQDFGLQENPWSQEVFRQKFRQFSYSDSTGPREALSRLR
ELCCQWLRPEVHSKEQILELLMLEQFLAILPEELQAWLREHRPENGEEAVTMLEELEKELEEPRQQDTTH
GQEMFWQEMTSTGALKSLSLNSPVQPLENQCKTETQESQAFQERDGRMVAGKVLMAKQEIVECVASAAMI
SPGKLPGETHSQRIAEEALGGLDNSKKQKGNAAGNKISQLPSQDRHFSLATFNRRIPTEHSVLESHESEG
SFSMNSNDITQQSVDTREKLYECFDCGKAFCQSSKLIRHQRIHTGERPYACKECGKAFSLSSDLVRHQRI
HSGEKPYECCECGKAFRGSSELIRHRRIHTGEKPYECGECGKAFSRSSALIQHKKIHTGDKSYECIACGK
AFGRSSILIEHQRIHTGEKPYECNECGKSFNQSSALTQHQRIHTGEKPYECSECRKTFRHRSGLMQHQRT
HTRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH