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Report for CCDS42421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42421.1 Public Homo sapiens 18 TAF4B 24 110 108 CCDS HistoryNCBI Gene:6875Re-query CCDS DB by CCDS ID:42421.1Re-query CCDS DB by GeneID:6875See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42421.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000269142.10 ENSP00000269142.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000269142.10Link to Ensembl Protein Viewer:ENSP00000269142.6Re-query CCDS DB by Nucleotide ID:ENST00000269142Re-query CCDS DB by Protein ID:ENSP00000269142
Original member Current member NCBI NM_005640.3 NP_005631.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005640.3Link to Protein Sequence:NP_005631.1Re-query CCDS DB by Nucleotide ID:NM_005640Re-query CCDS DB by Protein ID:NP_005631Link to BLAST:NP_005631.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005631.1 862 Q92750-1 862 100% 0 0

Chromosomal Locations for CCDS 42421.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 26226934 26227276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26265170 26265315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26267516 26267623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26274663 26274824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26274931 26275053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26281971 26282060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26285882 26286499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26292246 26292381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26293426 26293531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26315229 26315398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26321070 26321200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26327015 26327140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26335175 26335231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26357690 26357794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 26389845 26390012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2589 nt):
ATGCCCGCCGGCCTCACCGAACCCGCCGGCGCCGCTCCCCCGGCTGCTGTGAGCGCCTCGGGGACCGTGA
CCATGGCCCCGGCCGGGGCGCTGCCGGTGCGGGTGGAGAGCACTCCGGTGGCCCTGGGCGCCGTGACTAA
GGCTCCTGTCAGCGTCTGCGTGGAGCCCACGGCGTCCCAGCCCCTGCGGTCCCCCGTGGGGACCCTGGTG
ACCAAAGTGGCTCCGGTCAGCGCCCCTCCTAAAGTCAGCAGCGGCCCTAGGCTGCCTGCTCCTCAGATAG
TCGCCGTGAAAGCCCCCAACACCACGACAATCCAGTTTCCTGCTAATTTGCAGCTTCCTCCAGGAACCGT
TTTGATTAAAAGTAACAGTGGTCCGTTGATGTTGGTATCTCCTCAGCAAACTGTAACAAGAGCCGAGACC
ACAAGTAACATAACCTCAAGGCCAGCAGTACCAGCGAATCCTCAAACAGTCAAAATCTGTACAGTGCCGA
ACTCTAGCTCACAATTAATCAAGAAAGTGGCAGTGACACCTGTTAAAAAATTGGCACAAATAGGAACTAC
TGTGGTAACCACTGTTCCGAAGCCTTCCTCAGTACAATCTGTGGCTGTGCCAACCAGTGTCGTCACAGTT
ACTCCTGGAAAGCCATTGAATACTGTAACTACCCTGAAGCCTTCAAGTTTGGGAGCATCATCCACTCCTT
CAAATGAGCCCAATCTTAAAGCAGAGAACTCAGCAGCTGTTCAGATTAATCTTTCTCCGACAATGCTAGA
AAATGTGAAGAAATGCAAGAACTTCCTTGCAATGTTAATAAAACTAGCATGTAGTGGATCACAGTCCCCA
GAAATGGGGCAAAATGTGAAGAAGCTGGTGGAACAACTTTTGGATGCAAAAATCGAAGCAGAAGAATTTA
CTAGGAAACTGTATGTTGAACTCAAGTCTTCACCTCAGCCTCACCTGGTTCCTTTTCTTAAGAAAAGCGT
GGTTGCCTTACGACAACTTCTGCCTAACTCCCAGAGCTTCATCCAGCAATGTGTTCAGCAGACTTCTAGT
GACATGGTCATTGCTACCTGTACTACAACAGTAACAACTTCTCCTGTGGTGACAACTACAGTGTCCTCAA
GCCAGTCTGAAAAGTCAATTATTGTTTCTGGAGCAACAGCACCCAGAACTGTGTCAGTGCAAACTTTGAA
CCCACTTGCTGGTCCAGTGGGAGCAAAAGCTGGAGTTGTGACACTTCATTCTGTGGGCCCAACTGCTGCA
ACAGGAGGAACAACAGCTGGAACTGGTTTGCTTCAGACTTCAAAACCACTTGTGACATCTGTGGCAAACA
CAGTGACCACGGTCTCACTGCAACCTGAAAAGCCAGTTGTCTCTGGAACAGCAGTAACACTGTCCCTTCC
AGCAGTAACTTTTGGAGAAACTTCAGGTGCAGCTATTTGTCTTCCATCTGTGAAACCTGTTGTTTCTTCT
GCTGGGACCACATCTGACAAGCCTGTTATTGGGACTCCAGTTCAAATCAAACTTGCCCAGCCGGGCCCTG
TCCTTTCACAACCAGCTGGGATTCCACAGGCAGTTCAAGTCAAGCAACTAGTAGTTCAGCAGCCTTCAGG
AGGCAATGAAAAACAAGTGACCACAATTTCACATTCCTCAACATTGACCATTCAGAAATGTGGACAGAAG
ACGATGCCAGTGAACACCATAATACCTACTAGTCAGTTTCCTCCAGCTTCCATTCTAAAGCAAATTACTC
TGCCTGGAAATAAAATTCTGTCACTTCAAGCATCTCCTACTCAGAAAAATAGAATAAAAGAGAATGTAAC
ATCATGCTTCCGAGATGAGGATGACATCAATGATGTGACTTCTATGGCAGGGGTCAACCTTAATGAAGAA
AATGCCTGCATCTTAGCAACAAACTCTGAATTGGTTGGCACACTCATTCAGTCATGTAAAGATGAACCAT
TTCTTTTTATTGGAGCTCTACAAAAGAGAATTTTAGACATTGGTAAAAAGCATGACATTACAGAACTTAA
CTCTGATGCTGTGAACTTGATCTCCCAAGCAACACAGGAACGACTACGAGGCCTTCTAGAAAAACTGACT
GCAATTGCTCAGCATCGAATGACTACTTACAAGGCAAGTGAAAATTACATCCTGTGTAGTGATACCAGGT
CACAGCTCAAATTTCTTGAAAAGCTGGATCAATTGGAGAAGCAGAGAAAGGATTTGGAAGAAAGAGAAAT
GTTACTTAAGGCAGCCAAGAGTCGTTCTAATAAAGAAGATCCAGAACAGCTGAGATTAAAGCAGAAAGCC
AAAGAGTTACAGCAATTGGAACTTGCACAGATACAGCATAGAGACGCTAATCTCACAGCTCTTGCAGCTA
TTGGACCAAGGAAGAAGAGACCACTAGAATCTGGAATTGAGGGCTTAAAAGACAACCTTCTTGCTTCTGG
GACATCCAGCCTGACAGCCACCAAACAGTTGCATCGTCCAAGAATCACGAGAATCTGCCTCAGGGACTTG
ATATTTTGTATGGAACAGGAACGGGAGATGAAGTATTCTCGAGCTCTATACCTGGCCCTTCTGAAGTGA

Translation (862 aa):
MPAGLTEPAGAAPPAAVSASGTVTMAPAGALPVRVESTPVALGAVTKAPVSVCVEPTASQPLRSPVGTLV
TKVAPVSAPPKVSSGPRLPAPQIVAVKAPNTTTIQFPANLQLPPGTVLIKSNSGPLMLVSPQQTVTRAET
TSNITSRPAVPANPQTVKICTVPNSSSQLIKKVAVTPVKKLAQIGTTVVTTVPKPSSVQSVAVPTSVVTV
TPGKPLNTVTTLKPSSLGASSTPSNEPNLKAENSAAVQINLSPTMLENVKKCKNFLAMLIKLACSGSQSP
EMGQNVKKLVEQLLDAKIEAEEFTRKLYVELKSSPQPHLVPFLKKSVVALRQLLPNSQSFIQQCVQQTSS
DMVIATCTTTVTTSPVVTTTVSSSQSEKSIIVSGATAPRTVSVQTLNPLAGPVGAKAGVVTLHSVGPTAA
TGGTTAGTGLLQTSKPLVTSVANTVTTVSLQPEKPVVSGTAVTLSLPAVTFGETSGAAICLPSVKPVVSS
AGTTSDKPVIGTPVQIKLAQPGPVLSQPAGIPQAVQVKQLVVQQPSGGNEKQVTTISHSSTLTIQKCGQK
TMPVNTIIPTSQFPPASILKQITLPGNKILSLQASPTQKNRIKENVTSCFRDEDDINDVTSMAGVNLNEE
NACILATNSELVGTLIQSCKDEPFLFIGALQKRILDIGKKHDITELNSDAVNLISQATQERLRGLLEKLT
AIAQHRMTTYKASENYILCSDTRSQLKFLEKLDQLEKQRKDLEEREMLLKAAKSRSNKEDPEQLRLKQKA
KELQQLELAQIQHRDANLTALAAIGPRKKRPLESGIEGLKDNLLASGTSSLTATKQLHRPRITRICLRDL
IFCMEQEREMKYSRALYLALLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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