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Report for CCDS42365.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42365.1 Public Homo sapiens 17 OR4D1 24 110 108 CCDS HistoryNCBI Gene:26689Re-query CCDS DB by CCDS ID:42365.1Re-query CCDS DB by GeneID:26689See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 42365.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000268912.6 ENSP00000365451.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000268912.6Link to Ensembl Protein Viewer:ENSP00000365451.3Re-query CCDS DB by Nucleotide ID:ENST00000268912Re-query CCDS DB by Protein ID:ENSP00000365451
Original member Current member EBI ENST00000641449.1 ENSP00000493234.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000641449.1Link to Ensembl Protein Viewer:ENSP00000493234.1Re-query CCDS DB by Nucleotide ID:ENST00000641449Re-query CCDS DB by Protein ID:ENSP00000493234
Original member Current member NCBI NM_001386095.1 NP_001373024.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001386095.1Link to Protein Sequence:NP_001373024.1Re-query CCDS DB by Nucleotide ID:NM_001386095Re-query CCDS DB by Protein ID:NP_001373024Link to BLAST:NP_001373024.1
Original member Current member NCBI NM_012374.2 NP_036506.1 Accepted alive Link to Nucleotide Sequence:NM_012374.2Link to Protein Sequence:NP_036506.1Re-query CCDS DB by Nucleotide ID:NM_012374Re-query CCDS DB by Protein ID:NP_036506Link to BLAST:NP_036506.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001373024.1 310 Q15615 310 100% 0 0
NP_036506.1 310 Q15615 310 100% 0 0

Chromosomal Locations for CCDS 42365.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 58155154 58156086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (933 nt):
ATGGAACCACAGAACACCACACAGGTATCAATGTTTGTCCTCTTAGGGTTTTCACAGACCCAAGAGCTCC
AGAAATTCCTGTTCCTTCTGTTCCTGTTAGTCTATGTTACCACCATTGTGGGAAACCTCCTTATCATGGT
CACAGTGACTTTTGACTGCCGGCTCCACACACCCATGTATTTTCTGCTCCGAAATCTAGCTCTCATAGAC
CTCTGCTATTCCACAGTCACCTCTCCAAAGATGCTGGTGGACTTCCTCCATGAGACCAAGACGATCTCCT
ACCAGGGCTGCATGGCCCAGATCTTCTTCTTCCACCTTTTGGGAGGTGGGACTGTCTTTTTTCTCTCAGT
CATGGCCTATGACCGCTACATAGCCATCTCCCAGCCCCTCCGGTATGTCACCATCATGAACACTCAATTG
TGTGTGGGCCTGGTAGTAGCCGCCTGGGTGGGGGGCTTTGTCCACTCCATTGTCCAACTGGCTCTGATAC
TTCCACTGCCCTTCTGTGGCCCCAATATCCTAGATAACTTCTACTGTGATGTTCCCCAAGTACTGAGACT
TGCCTGCACTGATACCTCCCTCCTGGAGTTCCTCATGATCTCCAACAGTGGGCTGCTAGTTATCATCTGG
TTCCTCCTCCTTCTGATCTCTTATACTGTCATCCTGGTGATGCTGAGGTCCCACTCGGGAAAGGCAAGGA
GGAAGGCAGCTTCCACCTGCACCACCCACATCATCGTGGTGTCCATGATCTTCATTCCCTGTATCTATAT
CTATACCTGGCCCTTCACCCCATTCCTCATGGACAAGGCTGTGTCCATCAGCTACACAGTCATGACCCCC
ATGCTCAACCCCATGATCTACACCCTGAGAAACCAGGACATGAAAGCAGCCATGAGGAGATTAGGCAAGT
GCCTAGTAATTTGCAGGGAGTAA

Translation (310 aa):
MEPQNTTQVSMFVLLGFSQTQELQKFLFLLFLLVYVTTIVGNLLIMVTVTFDCRLHTPMYFLLRNLALID
LCYSTVTSPKMLVDFLHETKTISYQGCMAQIFFFHLLGGGTVFFLSVMAYDRYIAISQPLRYVTIMNTQL
CVGLVVAAWVGGFVHSIVQLALILPLPFCGPNILDNFYCDVPQVLRLACTDTSLLEFLMISNSGLLVIIW
FLLLLISYTVILVMLRSHSGKARRKAASTCTTHIIVVSMIFIPCIYIYTWPFTPFLMDKAVSISYTVMTP
MLNPMIYTLRNQDMKAAMRRLGKCLVICRE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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