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Report for CCDS42362.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42362.1 Public Homo sapiens 17 UTP18 24 110 108 CCDS HistoryNCBI Gene:51096Re-query CCDS DB by CCDS ID:42362.1Re-query CCDS DB by GeneID:51096See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42362.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000225298.12 ENSP00000225298.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000225298.12Link to Ensembl Protein Viewer:ENSP00000225298.7Re-query CCDS DB by Nucleotide ID:ENST00000225298Re-query CCDS DB by Protein ID:ENSP00000225298
Original member Current member NCBI NM_016001.3 NP_057085.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016001.3Link to Protein Sequence:NP_057085.2Re-query CCDS DB by Nucleotide ID:NM_016001Re-query CCDS DB by Protein ID:NP_057085Link to BLAST:NP_057085.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057085.2 556 Q9Y5J1 556 100% 0 0

Chromosomal Locations for CCDS 42362.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 51260585 51260926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51263274 51263386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51266182 51266280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51268837 51268904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51273362 51273450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51275866 51275991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51277130 51277304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51280005 51280105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51280389 51280479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51285245 51285368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51288029 51288203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51293903 51294045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 51296965 51296989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1671 nt):
ATGCCGCCGGAGCGGAGGAGACGAATGAAACTGGACCGGAGAACCGGAGCGAAGCCGAAGCGGAAGCCCG
GAATGAGGCCGGACTGGAAAGCCGGAGCGGGGCCAGGCGGGCCTCCCCAAAAGCCTGCCCCTTCATCCCA
GCGGAAACCGCCGGCCCGGCCGAGCGCGGCGGCCGCTGCGATTGCAGTCGCGGCGGCGGAGGAAGAGAGA
CGGCTCCGGCAGCGGAACCGCCTGAGGCTGGAGGAGGACAAACCGGCCGTGGAGCGGTGCTTGGAGGAGC
TGGTCTTCGGCGACGTCGAGAACGACGAGGACGCGTTGCTGCGGCGTCTGCGAGGCCCGAGGGTTCAAGA
ACATGAAGACTCGGGTGACTCAGAAGTGGAGAATGAAGCAAAAGGTAATTTTCCACCTCAAAAGAAGCCA
GTTTGGGTGGATGAAGAAGATGAAGATGAGGAAATGGTTGACATGATGAACAATCGGTTTCGGAAGGATA
TGATGAAAAATGCTAGTGAAAGTAAACTTTCGAAAGACAACCTTAAAAAGAGACTTAAAGAAGAATTCCA
ACATGCCATGGGAGGAGTACCTGCCTGGGCAGAGACTACTAAGCGGAAAACATCTTCAGATGATGAAAGT
GAAGAGGATGAAGATGATTTGTTGCAAAGGACTGGGAATTTCATATCCACATCAACTTCTCTTCCAAGAG
GAATCTTGAAGATGAAGAACTGCCAGCATGCGAATGCTGAACGTCCTACTGTTGCTCGGATCTCATCTGT
GCAGTTCCATCCCGGTGCACAGATTGTGATGGTTGCTGGATTAGATAATGCTGTATCACTATTTCAGGTT
GATGGGAAAACAAATCCTAAAATTCAGAGCATCTATTTGGAAAGGTTTCCAATCTTTAAGGCTTGTTTTA
GTGCTAATGGGGAAGAAGTTTTAGCCACGAGTACCCACAGCAAGGTTCTTTATGTCTATGACATGCTGGC
TGGAAAGTTAATTCCTGTGCATCAAGTGAGAGGTTTGAAAGAGAAGATAGTGAGGAGCTTTGAAGTCTCC
CCAGATGGGTCCTTCTTGCTCATAAATGGCATTGCTGGATATTTGCATTTGCTAGCAATGAAGACCAAAG
AACTGATTGGAAGCATGAAAATTAATGGAAGGGTTGCAGCATCCACATTCTCTTCAGATAGTAAGAAAGT
ATACGCCTCTTCGGGGGATGGAGAAGTTTATGTTTGGGATGTGAACTCAAGGAAGTGCCTTAACAGATTT
GTTGATGAAGGCAGTTTATATGGATTAAGCATTGCCACATCTAGGAATGGACAGTATGTTGCTTGTGGTT
CTAATTGTGGAGTGGTAAATATATACAATCAAGATTCTTGTCTCCAAGAAACAAACCCAAAGCCAATAAA
AGCTATAATGAACTTGGTTACAGGTGTTACTTCTCTGACCTTCAATCCTACTACAGAAATCTTGGCAATT
GCTTCAGAAAAAATGAAAGAAGCAGTCAGATTGGTTCATCTTCCTTCCTGTACAGTATTTTCAAACTTCC
CAGTCATTAAAAATAAGAATATTTCTCATGTTCATACCATGGATTTTTCTCCGAGAAGTGGATACTTTGC
CTTGGGGAATGAAAAGGGCAAGGCCCTGATGTATAGGTTGCACCATTACTCAGACTTCTAA

Translation (556 aa):
MPPERRRRMKLDRRTGAKPKRKPGMRPDWKAGAGPGGPPQKPAPSSQRKPPARPSAAAAAIAVAAAEEER
RLRQRNRLRLEEDKPAVERCLEELVFGDVENDEDALLRRLRGPRVQEHEDSGDSEVENEAKGNFPPQKKP
VWVDEEDEDEEMVDMMNNRFRKDMMKNASESKLSKDNLKKRLKEEFQHAMGGVPAWAETTKRKTSSDDES
EEDEDDLLQRTGNFISTSTSLPRGILKMKNCQHANAERPTVARISSVQFHPGAQIVMVAGLDNAVSLFQV
DGKTNPKIQSIYLERFPIFKACFSANGEEVLATSTHSKVLYVYDMLAGKLIPVHQVRGLKEKIVRSFEVS
PDGSFLLINGIAGYLHLLAMKTKELIGSMKINGRVAASTFSSDSKKVYASSGDGEVYVWDVNSRKCLNRF
VDEGSLYGLSIATSRNGQYVACGSNCGVVNIYNQDSCLQETNPKPIKAIMNLVTGVTSLTFNPTTEILAI
ASEKMKEAVRLVHLPSCTVFSNFPVIKNKNISHVHTMDFSPRSGYFALGNEKGKALMYRLHHYSDF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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