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Report for CCDS42253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42253.1 Public Homo sapiens 17 PLSCR3 24 110 108 CCDS HistoryNCBI Gene:57048Re-query CCDS DB by CCDS ID:42253.1Re-query CCDS DB by GeneID:57048See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42253.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324822.15 ENSP00000316021.11 Accepted alive Link to Ensembl Transcript Viewer:ENST00000324822.15Link to Ensembl Protein Viewer:ENSP00000316021.11Re-query CCDS DB by Nucleotide ID:ENST00000324822Re-query CCDS DB by Protein ID:ENSP00000316021
Original member Current member EBI ENST00000574401.5 ENSP00000459019.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000574401.5Link to Ensembl Protein Viewer:ENSP00000459019.1Re-query CCDS DB by Nucleotide ID:ENST00000574401Re-query CCDS DB by Protein ID:ENSP00000459019
Original member Current member EBI ENST00000576201.5 ENSP00000459419.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000576201.5Link to Ensembl Protein Viewer:ENSP00000459419.1Re-query CCDS DB by Nucleotide ID:ENST00000576201Re-query CCDS DB by Protein ID:ENSP00000459419
Original member Current member EBI ENST00000619711.5 ENSP00000483743.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000619711.5Link to Ensembl Protein Viewer:ENSP00000483743.2Re-query CCDS DB by Nucleotide ID:ENST00000619711Re-query CCDS DB by Protein ID:ENSP00000483743
Original member Current member NCBI NM_001201576.2 NP_001188505.1 Accepted alive Link to Nucleotide Sequence:NM_001201576.2Link to Protein Sequence:NP_001188505.1Re-query CCDS DB by Nucleotide ID:NM_001201576Re-query CCDS DB by Protein ID:NP_001188505Link to BLAST:NP_001188505.1
Original member Current member NCBI NM_001369407.1 NP_001356336.1 Accepted alive Link to Nucleotide Sequence:NM_001369407.1Link to Protein Sequence:NP_001356336.1Re-query CCDS DB by Nucleotide ID:NM_001369407Re-query CCDS DB by Protein ID:NP_001356336Link to BLAST:NP_001356336.1
Original member Current member NCBI NM_020360.4 NP_065093.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020360.4Link to Protein Sequence:NP_065093.2Re-query CCDS DB by Nucleotide ID:NM_020360Re-query CCDS DB by Protein ID:NP_065093Link to BLAST:NP_065093.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001188505.1 295 Q9NRY6 295 100% 0 0
NP_001356336.1 295 Q9NRY6 295 100% 0 0
NP_065093.2 295 Q9NRY6 295 100% 0 0

Chromosomal Locations for CCDS 42253.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7390385 7390441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7390634 7390795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7392791 7392952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7393144 7393364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7393467 7393509 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7393601 7393836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7394104 7394110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (888 nt):
ATGGCAGGCTACTTGCCCCCCAAAGGCTACGCCCCTTCGCCCCCACCTCCCTACCCTGTCACCCCTGGGT
ACCCGGAGCCGGCGCTACATCCTGGGCCCGGGCAGGCGCCAGTGCCCGCCCAGGTACCTGCCCCAGCTCC
CGGCTTCGCCCTCTTCCCCTCGCCTGGCCCCGTGGCCTTGGGGTCTGCTGCCCCCTTCTTGCCACTGCCA
GGGGTGCCTTCTGGCCTCGAATTCCTGGTGCAGATTGATCAGATTTTGATTCACCAGAAGGCTGAGCGAG
TGGAAACGTTCCTAGGCTGGGAGACCTGTAATCGGTATGAACTGCGCTCTGGGGCCGGGCAGCCCCTGGG
TCAGGCGGCCGAGGAGAGCAACTGCTGCGCCCGTCTGTGCTGTGGCGCCCGCCGGCCGCTGCGTGTCCGC
CTGGCCGACCCCGGGGACCGTGAGGTGCTGCGTTTGCTCCGCCCGCTGCACTGTGGCTGCAGCTGCTGCC
CCTGTGGCCTCCAGGAGATGGAAGTACAGGCTCCACCAGGCACCACCATTGGCCACGTGCTACAGACCTG
GCATCCCTTCCTCCCCAAGTTCTCCATCCAGGATGCCGATCGCCAGACAGTCTTGCGAGTGGTGGGGCCC
TGCTGGACCTGTGGCTGTGGCACAGACACCAACTTTGAGGTGAAGACTCGGGATGAATCCCGCAGTGTGG
GCCGCATCAGCAAGCAGTGGGGGGGCCTGGTCCGAGAAGCCCTCACAGATGCAGATGACTTTGGCCTACA
GTTCCCGCTGGACCTGGATGTGAGGGTGAAGGCTGTGCTGCTGGGAGCCACATTCCTCATTGACTACATG
TTCTTTGAGAAGCGAGGAGGCGCTGGGCCCTCTGCCGTCACCAGTTAG

Translation (295 aa):
MAGYLPPKGYAPSPPPPYPVTPGYPEPALHPGPGQAPVPAQVPAPAPGFALFPSPGPVALGSAAPFLPLP
GVPSGLEFLVQIDQILIHQKAERVETFLGWETCNRYELRSGAGQPLGQAAEESNCCARLCCGARRPLRVR
LADPGDREVLRLLRPLHCGCSCCPCGLQEMEVQAPPGTTIGHVLQTWHPFLPKFSIQDADRQTVLRVVGP
CWTCGCGTDTNFEVKTRDESRSVGRISKQWGGLVREALTDADDFGLQFPLDLDVRVKAVLLGATFLIDYM
FFEKRGGAGPSAVTS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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