NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS42248.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42248.1 Public Homo sapiens 17 BCL6B 24 110 108 CCDS HistoryNCBI Gene:255877Re-query CCDS DB by CCDS ID:42248.1Re-query CCDS DB by GeneID:255877See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 42248.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000293805.10 ENSP00000293805.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000293805.10Link to Ensembl Protein Viewer:ENSP00000293805.5Re-query CCDS DB by Nucleotide ID:ENST00000293805Re-query CCDS DB by Protein ID:ENSP00000293805
Original member Current member NCBI NM_181844.4 NP_862827.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181844.4Link to Protein Sequence:NP_862827.2Re-query CCDS DB by Nucleotide ID:NM_181844Re-query CCDS DB by Protein ID:NP_862827Link to BLAST:NP_862827.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_862827.2 479 Q8N143 479 100% 0 0

Chromosomal Locations for CCDS 42248.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7023672 7023850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7024083 7024304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7024401 7024763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7025076 7025200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7026457 7026621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7026705 7026835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7026950 7027087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7027503 7027619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGGTTCCCCCGCCGCCCCGGAGGGAGCGCTGGGCTACGTCCGCGAGTTCACTCGCCACTCCTCCGACG
TGCTGGGCAACCTCAACGAGCTGCGCCTGCGCGGGATCCTCACTGACGTCACGCTGCTGGTTGGCGGGCA
ACCCCTCAGAGCACACAAGGCAGTTCTCATCGCCTGCAGTGGCTTCTTCTATTCAATTTTCCGGGGCCGT
GCGGGAGTCGGGGTGGACGTGCTCTCTCTGCCCGGGGGTCCCGAAGCGAGAGGCTTCGCCCCTCTATTGG
ACTTCATGTACACTTCGCGCCTGCGCCTCTCTCCAGCCACTGCACCAGCAGTCCTAGCGGCCGCCACCTA
TTTGCAGATGGAGCACGTGGTCCAGGCATGCCACCGCTTCATCCAGGCCAGCTATGAACCTCTGGGCATC
TCCCTGCGCCCCCTGGAAGCAGAACCCCCAACACCCCCAACGGCCCCTCCACCAGGTAGTCCCAGGCGCT
CCGAAGGACACCCAGACCCACCTACTGAATCTCGAAGCTGCAGTCAAGGCCCCCCCAGTCCAGCCAGCCC
TGACCCCAAGGCCTGCAACTGGAAAAAGTACAAGTACATCGTGCTAAACTCTCAGGCCTCCCAAGCAGGG
AGCCTGGTCGGGGAGAGAAGTTCTGGTCAACCTTGCCCCCAAGCCAGGCTCCCCAGTGGAGACGAGGCCT
CCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGAAGAAGGACCCATTCCTGGTCCCCAGAGCAGGCTCTC
TCCAACTGCTGCCACTGTGCAGTTCAAATGTGGGGCTCCAGCCAGTACCCCCTACCTCCTCACATCCCAG
GCTCAAGACACCTCTGGATCACCCTCTGAACGGGCTCGTCCACTACCGGGAAGTGAATTTTTCAGCTGCC
AGAACTGTGAGGCTGTGGCAGGGTGCTCATCGGGGCTGGACTCCTTGGTTCCTGGGGACGAAGACAAACC
CTATAAGTGTCAGCTGTGCCGGTCTTCGTTCCGCTACAAGGGCAACCTTGCCAGTCATCGTACAGTGCAC
ACAGGGGAAAAGCCTTACCACTGCTCAATCTGCGGAGCCCGTTTTAACCGGCCAGCAAACCTGAAAACGC
ACAGCCGCATCCATTCGGGAGAGAAGCCGTATAAGTGTGAGACGTGCGGCTCGCGCTTTGTACAGGTGGC
ACATCTGCGGGCGCACGTGCTGATCCACACCGGGGAGAAGCCCTACCCTTGCCCTACCTGCGGAACCCGC
TTCCGCCACCTGCAGACCCTCAAGAGCCACGTTCGCATCCACACCGGAGAGAAGCCTTACCACTGCGACC
CCTGTGGCCTGCATTTCCGGCACAAGAGTCAACTGCGGCTGCATCTGCGCCAGAAACACGGAGCTGCTAC
CAACACCAAAGTGCACTACCACATTCTCGGGGGGCCCTAG

Translation (479 aa):
MGSPAAPEGALGYVREFTRHSSDVLGNLNELRLRGILTDVTLLVGGQPLRAHKAVLIACSGFFYSIFRGR
AGVGVDVLSLPGGPEARGFAPLLDFMYTSRLRLSPATAPAVLAAATYLQMEHVVQACHRFIQASYEPLGI
SLRPLEAEPPTPPTAPPPGSPRRSEGHPDPPTESRSCSQGPPSPASPDPKACNWKKYKYIVLNSQASQAG
SLVGERSSGQPCPQARLPSGDEASSSSSSSSSSSEEGPIPGPQSRLSPTAATVQFKCGAPASTPYLLTSQ
AQDTSGSPSERARPLPGSEFFSCQNCEAVAGCSSGLDSLVPGDEDKPYKCQLCRSSFRYKGNLASHRTVH
TGEKPYHCSICGARFNRPANLKTHSRIHSGEKPYKCETCGSRFVQVAHLRAHVLIHTGEKPYPCPTCGTR
FRHLQTLKSHVRIHTGEKPYHCDPCGLHFRHKSQLRLHLRQKHGAATNTKVHYHILGGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH