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Report for CCDS42230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42230.1 Public Homo sapiens 17 HIC1 24 110 108 CCDS HistoryNCBI Gene:3090Re-query CCDS DB by CCDS ID:42230.1Re-query CCDS DB by GeneID:3090See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42230.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399849.4 ENSP00000382742.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399849.4Link to Ensembl Protein Viewer:ENSP00000382742.2Re-query CCDS DB by Nucleotide ID:ENST00000399849Re-query CCDS DB by Protein ID:ENSP00000382742
Original member Current member EBI ENST00000619757.5 ENSP00000477858.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000619757.5Link to Ensembl Protein Viewer:ENSP00000477858.1Re-query CCDS DB by Nucleotide ID:ENST00000619757Re-query CCDS DB by Protein ID:ENSP00000477858
Original member Current member NCBI NM_006497.4 NP_006488.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006497.4Link to Protein Sequence:NP_006488.2Re-query CCDS DB by Nucleotide ID:NM_006497Re-query CCDS DB by Protein ID:NP_006488Link to BLAST:NP_006488.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006488.2 714 Q14526-2 714 100% 0 0

Chromosomal Locations for CCDS 42230.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 2056691 2058835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2145 nt):
ATGCTGGACACGATGGAGGCGCCCGGCCACTCCAGGCAGCTGCTGCTGCAGCTCAACAACCAGCGCACCA
AGGGCTTCTTGTGCGACGTGATCATCGTGGTGCAGAACGCCCTCTTCCGCGCGCACAAGAACGTGCTGGC
GGCCAGCAGCGCCTACCTCAAGTCCCTGGTGGTGCATGACAACCTGCTCAACCTGGACCATGACATGGTG
AGCCCGGCCGTGTTCCGCCTGGTGCTGGACTTCATCTACACCGGCCGCCTGGCTGACGGCGCAGAGGCGG
CTGCGGCCGCGGCCGTGGCCCCGGGGGCTGAGCCGAGCCTGGGCGCCGTGCTGGCCGCCGCCAGCTACCT
GCAGATCCCCGACCTCGTGGCGCTGTGCAAGAAACGCCTCAAGCGCCACGGCAAGTACTGCCACCTGCGG
GGCGGCGGCGGCGGCGGCGGCGGCTACGCGCCCTATGGTCGGCCGGGCCGGGGCCTGCGGGCCGCCACGC
CGGTCATCCAGGCCTGCTACCCGTCCCCAGTCGGGCCTCCGCCGCCGCCTGCCGCGGAGCCGCCCTCGGG
CCCAGAGGCCGCGGTCAACACGCACTGCGCCGAGCTGTACGCGTCGGGACCCGGCCCGGCCGCCGCACTC
TGTGCCTCGGAGCGCCGCTGCTCCCCTCTTTGTGGCCTGGACCTGTCCAAGAAGAGCCCGCCGGGCTCCG
CGGCGCCAGAGCGGCCGCTGGCTGAGCGCGAGCTGCCCCCGCGCCCGGACAGCCCTCCCAGCGCCGGCCC
CGCCGCCTACAAGGAGCCGCCTCTCGCCCTGCCGTCGCTGCCGCCGCTGCCCTTCCAGAAGCTGGAGGAG
GCCGCACCGCCTTCCGACCCATTTCGCGGCGGCAGCGGCAGCCCGGGACCCGAGCCCCCCGGCCGCCCCG
ACGGGCCTAGTCTCCTCTATCGCTGGATGAAGCACGAGCCGGGCCTGGGTAGCTATGGCGACGAGCTGGG
CCGGGAGCGCGGCTCCCCCAGCGAGCGCTGCGAAGAGCGTGGTGGGGACGCGGCCGTCTCGCCCGGGGGG
CCCCCGCTCGGCCTGGCGCCGCCGCCGCGCTACCCTGGCAGCCTGGACGGGCCCGGCGCGGGCGGCGACG
GCGACGACTACAAGAGCAGCAGCGAGGAGACCGGTAGCAGCGAGGACCCCAGCCCGCCTGGCGGCCACCT
CGAGGGCTACCCATGCCCGCACCTGGCCTATGGCGAGCCCGAGAGCTTCGGTGACAACCTGTACGTGTGC
ATTCCGTGCGGCAAGGGCTTCCCCAGCTCTGAGCAGCTGAACGCGCACGTGGAGGCTCACGTGGAGGAGG
AGGAAGCGCTGTACGGCAGGGCCGAGGCGGCCGAAGTGGCCGCTGGGGCCGCCGGCCTAGGGCCCCCTTT
TGGAGGCGGCGGGGACAAGGTCGCCGGGGCTCCGGGTGGCCTGGGAGAGCTGCTGCGGCCCTACCGCTGC
GCGTCGTGCGACAAGAGCTACAAGGACCCGGCCACGCTGCGGCAGCACGAGAAGACGCACTGGCTGACCC
GGCCCTACCCATGCACCATCTGCGGGAAGAAGTTCACGCAGCGTGGGACCATGACGCGCCACATGCGCAG
CCACCTGGGCCTCAAGCCCTTCGCGTGCGACGCGTGCGGCATGCGGTTCACGCGCCAGTACCGCCTCACG
GAGCACATGCGCATCCACTCGGGCGAGAAGCCCTACGAGTGCCAGGTGTGCGGCGGCAAGTTCGCACAGC
AACGCAACCTCATCAGCCACATGAAGATGCACGCCGTGGGGGGCGCGGCCGGCGCGGCCGGGGCGCTGGC
GGGCTTGGGGGGGCTCCCCGGCGTCCCCGGCCCCGACGGCAAGGGCAAGCTCGACTTCCCCGAGGGCGTC
TTTGCTGTGGCTCGCCTCACGGCCGAGCAGCTGAGCCTGAAGCAGCAGGACAAGGCGGCCGCGGCCGAGC
TGCTGGCGCAGACCACGCACTTCCTGCACGACCCCAAGGTGGCGCTGGAGAGCCTCTACCCGCTGGCCAA
GTTCACGGCCGAGCTGGGCCTCAGCCCCGACAAGGCGGCCGAGGTGCTGAGCCAGGGCGCTCACCTGGCG
GCCGGGCCCGACGGCCGGACCATCGACCGTTTCTCTCCCACCTAG

Translation (714 aa):
MLDTMEAPGHSRQLLLQLNNQRTKGFLCDVIIVVQNALFRAHKNVLAASSAYLKSLVVHDNLLNLDHDMV
SPAVFRLVLDFIYTGRLADGAEAAAAAAVAPGAEPSLGAVLAAASYLQIPDLVALCKKRLKRHGKYCHLR
GGGGGGGGYAPYGRPGRGLRAATPVIQACYPSPVGPPPPPAAEPPSGPEAAVNTHCAELYASGPGPAAAL
CASERRCSPLCGLDLSKKSPPGSAAPERPLAERELPPRPDSPPSAGPAAYKEPPLALPSLPPLPFQKLEE
AAPPSDPFRGGSGSPGPEPPGRPDGPSLLYRWMKHEPGLGSYGDELGRERGSPSERCEERGGDAAVSPGG
PPLGLAPPPRYPGSLDGPGAGGDGDDYKSSSEETGSSEDPSPPGGHLEGYPCPHLAYGEPESFGDNLYVC
IPCGKGFPSSEQLNAHVEAHVEEEEALYGRAEAAEVAAGAAGLGPPFGGGGDKVAGAPGGLGELLRPYRC
ASCDKSYKDPATLRQHEKTHWLTRPYPCTICGKKFTQRGTMTRHMRSHLGLKPFACDACGMRFTRQYRLT
EHMRIHSGEKPYECQVCGGKFAQQRNLISHMKMHAVGGAAGAAGALAGLGGLPGVPGPDGKGKLDFPEGV
FAVARLTAEQLSLKQQDKAAAAELLAQTTHFLHDPKVALESLYPLAKFTAELGLSPDKAAEVLSQGAHLA
AGPDGRTIDRFSPT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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