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Report for CCDS42211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42211.1 Public Homo sapiens 16 MTHFSD 24 110 108 CCDS HistoryNCBI Gene:64779Re-query CCDS DB by CCDS ID:42211.1Re-query CCDS DB by GeneID:64779See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42211.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000634347.1 ENSP00000489295.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000634347.1Link to Ensembl Protein Viewer:ENSP00000489295.1Re-query CCDS DB by Nucleotide ID:ENST00000634347Re-query CCDS DB by Protein ID:ENSP00000489295
Original member Current member NCBI NM_022764.3 NP_073601.2 Accepted alive Link to Nucleotide Sequence:NM_022764.3Link to Protein Sequence:NP_073601.2Re-query CCDS DB by Nucleotide ID:NM_022764Re-query CCDS DB by Protein ID:NP_073601Link to BLAST:NP_073601.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_073601.2 382 Q2M296-2 382 100% 0 0

Chromosomal Locations for CCDS 42211.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 86532011 86532481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 86541697 86541822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 86542101 86542213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 86546559 86546649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 86548464 86548577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 86552033 86552146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 86554645 86554748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 86555169 86555184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1149 nt):
ATGGAGCCGAGGGCAGGTGTCTCCAAACAGGACATACGTGAACAAATTTGGGGCTACATGGAATCACAAA
ATTTAGCTGACTTTCCCCGACCTGTTCATCACAGGATACCCAACTTTAAGGGGTCTTATCTGGCTTGCCA
AAACATCAAAGACCTAGACGTTTTTGCCAGAACACAGGAAGTTAAAGTGGACCCTGATAAACCACTGGAA
GGCGTTCGGCTGCTGGTGCTGCAGAGCAAAAAAACATTGTTGGTTCCAACACCACGACTGAGAACGGGAT
TGTTTAATAAGATCACACCACCCCCTGGGGCAACTAAAGACATCTTGAGAAAATGTGCCACCTCTCAGGG
TGTGAGGAACTACAGTGTCCCCATAGGCTTGGACTCCAGAGTCCTCGTGGATTTAGTTGTGGTGGGATCC
GTCGCCGTTTCTGAAAAAGGCTGGAGAATCGGGAAGGGAGAAGGCTACGCCGATCTGGAATATGCCATGA
TGGTATCCATGGGCGCCGTCAGCAAGGAGACGCCGGTGGTCACCATCGTCCACGACTGCCAGGTCGTGGA
CATCCCTGAAGAGCTTGTTGAGGAGCACGACATCACTGTGGACTACATCCTCACTCCAACCAGAGTCATC
GCCACAGGCTGCAAGCGCCCAAAGCCAATGGGAATCACCTGGTTCAAGATCAGCCTGGAGATGATGGAGA
AAATCCCCATACTGAGGAGCCTCCGCGCCCGAGAGCAGCAGGCTGGGAAGGATGTCACCCTCCAGGGTGA
GCACCAGCACCTTCCGGAACCAGGCTGCCAGCAGACAGTGCCCCTGAGTGTTGGCAGGAGGCCCCCGGAC
ACACCCGGACCAGAAACCAATTCCATGGAGGCAGCCCCTGGCTCCCCACCAGGGGAGGGTGCCCCGCTTG
CAGCCGATGTTTACGTTGGGAACCTCCCCGGGGACGCCCGTGTGAGTGACCTGAAGAGAGCCCTGCGGGA
ACTCGGCTCCGTGCCCCTGCGGCTCACCTGGCAGGGCCCGCGGCGCAGAGCCTTCCTCCATTACCCGGAC
TCTGCCGCAGCCCAGCAGGCCGTCTCCTGCTTGCAGGGCCTGCGCCTGGGCACCGACACCCTGAGGGTGG
CGCTGGCCAGGCAGCAGAGGGACAAGTGA

Translation (382 aa):
MEPRAGVSKQDIREQIWGYMESQNLADFPRPVHHRIPNFKGSYLACQNIKDLDVFARTQEVKVDPDKPLE
GVRLLVLQSKKTLLVPTPRLRTGLFNKITPPPGATKDILRKCATSQGVRNYSVPIGLDSRVLVDLVVVGS
VAVSEKGWRIGKGEGYADLEYAMMVSMGAVSKETPVVTIVHDCQVVDIPEELVEEHDITVDYILTPTRVI
ATGCKRPKPMGITWFKISLEMMEKIPILRSLRAREQQAGKDVTLQGEHQHLPEPGCQQTVPLSVGRRPPD
TPGPETNSMEAAPGSPPGEGAPLAADVYVGNLPGDARVSDLKRALRELGSVPLRLTWQGPRRRAFLHYPD
SAAAQQAVSCLQGLRLGTDTLRVALARQQRDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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