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Report for CCDS42182.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42182.1 Public Homo sapiens 16 CENPT 24 110 108 CCDS HistoryNCBI Gene:80152Re-query CCDS DB by CCDS ID:42182.1Re-query CCDS DB by GeneID:80152See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42182.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000440851.6 ENSP00000400140.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000440851.6Link to Ensembl Protein Viewer:ENSP00000400140.2Re-query CCDS DB by Nucleotide ID:ENST00000440851Re-query CCDS DB by Protein ID:ENSP00000400140
Original member Current member EBI ENST00000562787.6 ENSP00000457810.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000562787.6Link to Ensembl Protein Viewer:ENSP00000457810.1Re-query CCDS DB by Nucleotide ID:ENST00000562787Re-query CCDS DB by Protein ID:ENSP00000457810
Original member Current member NCBI NM_025082.4 NP_079358.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_025082.4Link to Protein Sequence:NP_079358.3Re-query CCDS DB by Nucleotide ID:NM_025082Re-query CCDS DB by Protein ID:NP_079358Link to BLAST:NP_079358.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079358.3 561 Q96BT3-1 561 100% 0 0

Chromosomal Locations for CCDS 42182.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 67828267 67828390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67828474 67828578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67828667 67828843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67829423 67829516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67829765 67830088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67830390 67830548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67831216 67831358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67831576 67831612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67831754 67831890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67832012 67832108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67832228 67832315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67832455 67832545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 67833750 67833859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1686 nt):
ATGGCTGACCACAACCCTGACAGCGACTCCACGCCGCGCACGCTGCTGCGACGCGTGCTGGATACAGCGG
ACCCGCGCACCCCGCGGCGACCCCGGAGTGCTCGGGCTGGAGCCCGGAGAGCCCTGCTTGAAACGGCTTC
CCCCAGGAAGTTGAGTGGCCAAACAAGGACGATAGCCAGAGGGCGTTCCCATGGAGCCAGGTCTGTTGGC
AGATCGGCCCATATTCAGGCCAGTGGGCACTTGGAGGAACAGACACCTCGGACGCTGCTGAAGAACATCC
TACTAACTGCCCCAGAATCTTCCATCCTGATGCCTGAGTCGGTAGTGAAGCCAGTGCCAGCACCGCAGGC
GGTCCAACCCTCCAGACAAGAGAGCAGTTGCGGCAGCCTGGAGCTGCAACTTCCTGAGCTCGAGCCCCCC
ACAACCCTGGCTCCAGGTCTGCTGGCCCCTGGCAGGAGGAAACAGAGGCTGAGACTGTCAGTGTTTCAGC
AGGGAGTGGACCAGGGGCTGTCTCTCTCCCAAGAGCCTCAAGGGAATGCTGATGCCTCTTCCCTCACCAG
ATCCCTCAACCTGACCTTTGCCACACCTCTTCAGCCACAGTCAGTGCAGAGGCCTGGCTTGGCCCGCAGA
CCTCCAGCCCGCCGAGCTGTAGACGTGGGTGCCTTTTTGCGGGATCTGCGAGATACTTCCCTGGCTCCTC
CAAACATTGTGTTGGAGGACACCCAGCCGTTCTCTCAGCCCATGGTTGGCTCCCCCAACGTGTATCACTC
CCTGCCCTGCACGCCTCACACTGGGGCTGAAGACGCTGAGCAGGCTGCCGGTCGCAAGACACAGAGCAGT
GGGCCTGGGCTGCAGAAGAATAGCCCTGGGAAACCAGCCCAGTTTCTGGCAGGAGAGGCAGAGGAGGTCA
ATGCCTTTGCTCTGGGCTTCCTGAGCACCAGCAGTGGTGTCTCTGGAGAAGATGAAGTAGAGCCCTTACA
CGATGGAGTTGAAGAGGCAGAGAAAAAGATGGAAGAAGAAGGTGTGAGTGTGAGTGAAATGGAGGCAACA
GGAGCACAAGGACCCAGCAGGGTAGAAGAGGCTGAGGGACACACAGAGGTGACAGAAGCAGAGGGATCCC
AGGGGACTGCTGAGGCTGACGGGCCAGGAGCATCTTCAGGGGATGAGGATGCCTCTGGCAGGGCAGCAAG
TCCAGAGTCGGCCTCCAGCACCCCTGAGTCTCTCCAGGCCAGGCGACATCATCAGTTTCTTGAGCCAGCC
CCAGCGCCTGGTGCTGCAGTCTTATCTTCAGAGCCTGCAGAGCCTCTGTTGGTCAGGCATCCCCCTAGGC
CCCGGACCACCGGCCCCAGGCCCCGGCAAGATCCCCACAAGGCTGGACTGAGCCACTATGTGAAACTCTT
TAGCTTCTATGCCAAGATGCCCATGGAGAGGAAGGCTCTTGAGATGGTGGAGAAGTGCCTAGATAAATAT
TTCCAGCATCTTTGTGATGATCTGGAGGTATTTGCTGCTCATGCTGGCCGCAAGACTGTGAAGCCAGAGG
ACCTGGAGCTGCTGATGCGGCGGCAGGGCCTGGTCACTGACCAAGTCTCACTGCACGTGCTAGTGGAGCG
GCACCTGCCCCTGGAGTACCGGCAGCTGCTCATCCCCTGTGCATACAGTGGCAACTCTGTCTTCCCTGCC
CAGTAG

Translation (561 aa):
MADHNPDSDSTPRTLLRRVLDTADPRTPRRPRSARAGARRALLETASPRKLSGQTRTIARGRSHGARSVG
RSAHIQASGHLEEQTPRTLLKNILLTAPESSILMPESVVKPVPAPQAVQPSRQESSCGSLELQLPELEPP
TTLAPGLLAPGRRKQRLRLSVFQQGVDQGLSLSQEPQGNADASSLTRSLNLTFATPLQPQSVQRPGLARR
PPARRAVDVGAFLRDLRDTSLAPPNIVLEDTQPFSQPMVGSPNVYHSLPCTPHTGAEDAEQAAGRKTQSS
GPGLQKNSPGKPAQFLAGEAEEVNAFALGFLSTSSGVSGEDEVEPLHDGVEEAEKKMEEEGVSVSEMEAT
GAQGPSRVEEAEGHTEVTEAEGSQGTAEADGPGASSGDEDASGRAASPESASSTPESLQARRHHQFLEPA
PAPGAAVLSSEPAEPLLVRHPPRPRTTGPRPRQDPHKAGLSHYVKLFSFYAKMPMERKALEMVEKCLDKY
FQHLCDDLEVFAAHAGRKTVKPEDLELLMRRQGLVTDQVSLHVLVERHLPLEYRQLLIPCAYSGNSVFPA
Q


Links Key
 Links to:   History report
  BLAST report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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