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Report for CCDS42156.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42156.1 Public Homo sapiens 16 TGFB1I1 24 110 108 CCDS HistoryNCBI Gene:7041Re-query CCDS DB by CCDS ID:42156.1Re-query CCDS DB by GeneID:7041See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42156.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394863.8 ENSP00000378332.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394863.8Link to Ensembl Protein Viewer:ENSP00000378332.3Re-query CCDS DB by Nucleotide ID:ENST00000394863Re-query CCDS DB by Protein ID:ENSP00000378332
Original member Current member NCBI NM_001042454.3 NP_001035919.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001042454.3Link to Protein Sequence:NP_001035919.1Re-query CCDS DB by Nucleotide ID:NM_001042454Re-query CCDS DB by Protein ID:NP_001035919Link to BLAST:NP_001035919.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035919.1 461 O43294-1 461 100% 0 0

Chromosomal Locations for CCDS 42156.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 31472189 31472201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31473441 31473556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31473682 31473734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31473835 31473977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31474152 31474239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31474350 31474455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31474563 31474757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31476012 31476185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31476481 31476562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31476862 31477010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31477310 31477576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1386 nt):
ATGGAGGACCTGGATGCCCTGCTCTCTGACCTGGAGACTACCACCTCGCACATGCCAAGGTCAGGGGCTC
CCAAAGAGCGCCCTGCGGAGCCTCTCACCCCTCCCCCATCCTATGGCCACCAGCCACAGACAGGGTCTGG
GGAGTCTTCAGGAGCCTCGGGGGACAAGGACCACCTGTACAGCACGGTATGCAAGCCTCGGTCCCCAAAG
CCTGCAGCCCCGGCGGCCCCTCCATTCTCCTCTTCCAGCGGTGTCTTGGGTACCGGGCTCTGTGAGCTAG
ATCGGTTGCTTCAGGAACTTAATGCCACTCAGTTCAACATCACAGATGAAATCATGTCTCAGTTCCCATC
TAGCAAGGTGGCTTCAGGAGAGCAGAAGGAGGACCAGTCTGAAGATAAGAAAAGACCCAGCCTCCCTTCC
AGCCCGTCTCCTGGCCTCCCAAAGGCTTCTGCCACCTCAGCCACTCTGGAGCTGGATAGACTGATGGCCT
CACTCTCTGACTTCCGCGTTCAAAACCATCTTCCAGCCTCTGGGCCAACTCAGCCACCGGTGGTGAGCTC
CACAAATGAGGGCTCCCCATCCCCACCAGAGCCGACTGGCAAGGGCAGCCTAGACACCATGCTGGGGCTG
CTGCAGTCCGACCTCAGCCGCCGGGGTGTTCCCACCCAGGCCAAAGGCCTCTGTGGCTCCTGCAATAAAC
CTATTGCTGGGCAAGTGGTGACGGCTCTGGGCCGCGCCTGGCACCCCGAGCACTTCGTTTGCGGAGGCTG
TTCCACCGCCCTGGGAGGCAGCAGCTTCTTCGAGAAGGATGGAGCCCCCTTCTGCCCCGAGTGCTACTTT
GAGCGCTTCTCGCCAAGATGTGGCTTCTGCAACCAGCCCATCCGACACAAGATGGTGACCGCCTTGGGCA
CTCACTGGCACCCAGAGCATTTCTGCTGCGTCAGTTGCGGGGAGCCCTTCGGAGATGAGGGTTTCCACGA
GCGCGAGGGCCGCCCCTACTGCCGCCGGGACTTCCTGCAGCTGTTCGCCCCGCGCTGCCAGGGCTGCCAG
GGCCCCATCCTGGATAACTACATCTCGGCGCTCAGCGCGCTCTGGCACCCGGACTGTTTCGTCTGCAGGG
AATGCTTCGCGCCCTTCTCGGGAGGCAGCTTTTTCGAGCACGAGGGCCGCCCGTTGTGCGAGAACCACTT
CCACGCACGACGCGGCTCGCTGTGCGCCACGTGTGGCCTCCCTGTGACCGGCCGCTGCGTGTCGGCCCTG
GGTCGCCGCTTCCACCCGGACCACTTCACATGCACCTTCTGCCTGCGCCCGCTCACCAAGGGGTCCTTCC
AGGAGCGCGCCGGCAAGCCCTACTGCCAGCCCTGCTTCCTGAAGCTCTTCGGCTGA

Translation (461 aa):
MEDLDALLSDLETTTSHMPRSGAPKERPAEPLTPPPSYGHQPQTGSGESSGASGDKDHLYSTVCKPRSPK
PAAPAAPPFSSSSGVLGTGLCELDRLLQELNATQFNITDEIMSQFPSSKVASGEQKEDQSEDKKRPSLPS
SPSPGLPKASATSATLELDRLMASLSDFRVQNHLPASGPTQPPVVSSTNEGSPSPPEPTGKGSLDTMLGL
LQSDLSRRGVPTQAKGLCGSCNKPIAGQVVTALGRAWHPEHFVCGGCSTALGGSSFFEKDGAPFCPECYF
ERFSPRCGFCNQPIRHKMVTALGTHWHPEHFCCVSCGEPFGDEGFHEREGRPYCRRDFLQLFAPRCQGCQ
GPILDNYISALSALWHPDCFVCRECFAPFSGGSFFEHEGRPLCENHFHARRGSLCATCGLPVTGRCVSAL
GRRFHPDHFTCTFCLRPLTKGSFQERAGKPYCQPCFLKLFG


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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