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Report for CCDS42155.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42155.1 Public Homo sapiens 16 ARMC5 24 110 108 CCDS HistoryNCBI Gene:79798Re-query CCDS DB by CCDS ID:42155.1Re-query CCDS DB by GeneID:79798See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42155.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000457010.6 ENSP00000399561.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457010.6Link to Ensembl Protein Viewer:ENSP00000399561.2Re-query CCDS DB by Nucleotide ID:ENST00000457010Re-query CCDS DB by Protein ID:ENSP00000399561
Original member Current member NCBI NM_024742.2 NP_079018.1 Accepted alive Link to Nucleotide Sequence:NM_024742.2Link to Protein Sequence:NP_079018.1Re-query CCDS DB by Nucleotide ID:NM_024742Re-query CCDS DB by Protein ID:NP_079018Link to BLAST:NP_079018.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079018.1 725 Q96C12-4 725 100% 0 0

Chromosomal Locations for CCDS 42155.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 31459525 31459999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31461922 31462029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31462131 31462917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 31464394 31465201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2178 nt):
ATGGCGGCTGCGAAGCCAACCCTCACGGACTCGCTCTCGTTCTGCCTCGCGCAGCTCGCGGCGGCGGCCG
GGGAGGCTCTGGGTGGGGAAAAGGACCCAGCGACCAACGAGACACCCCTGAGCCGCGCGCTCCTAGCCCT
CCGCACGCGCCACATCAAGGCAGCGGGGGGAATCGAGCGCTTCCGGGCACGCGGCGGGCTCCGCCCCCTA
CTCGCGCTGCTACGGCGAGCGGCTGCAGCGGGTTCCGCCCCGTCCCAGGCAGGCCCCGGCTCCGCCCCCT
CGTCGGCCGCGTCGGGAGCTTCTAGCCCCGCCCCCGCGTCGGGCCCCGCCCCCTCCGCTGTGTCGTCGTC
TAGTCCTACGCCGCCAGTGCGCCTGCGCAAGACGCTGGACTTGGCGCTCAGCATCCTAGCCGATTGCTGT
ACGGAAGGGGCGTGCCGGACCGAAGTGCGCAGACTCGGAGGCATACTCCCTTTGGTGACCATTCTTCAGT
GCATGAAGACAGACAGCATCCAGAACCGAACGGCCCGTGCCCTGGGGAACTTAGCCATGGAACCTGAGAG
CTGTGGGGACATCCACTGTGCTGGTGCTGTTCCCCTGCTTGTGGAGAGCCTGACAGCCTGCCAGGACTCG
CAGTGCCTACAGAGCGTGGTGCGTGCCCTCCGTAACCTGGCAGACTCACCCCAGCACCGCCTGGCCTTGG
CACAGCAGGGAGCAGTGCGTCCGCTGGCCGAGCTCCTGGCCACTGCCCCAGATGCTGCACTGACCTTAGC
CCTCGTCCGTGCCCTCCTGGAACTCAGCCGAGGCTGCTCCCGGGCCTGTGCTGAGCAGCTAAGTCTGGGT
GGGGGATTGGGCCCACTCGTCAGCCTGGCTTCCCACCCCAAGCGGGCAGTACGCGAGGGAACCATTCTGA
TCCTCGCCAACCTGTGTGCCCAGGGCCTGATTCGGCCTGCACTGGGCAATGCTGGTGGCGTGGAGGTGCT
GGTAGATGAGCTCCGGCAGCGCCGGGATCCTAATGGAGCTAGCCCAACCTCCCAGCAGCCCCTGGTGCGG
GCTGTGTGCCTCCTATGTCGTGAGGCCATCAACCGGGCCCGACTGCGGGATGCTGGTGGCTTGGATCTAC
TGATGGGCCTGCTGCGGGACCCTCGTGCAAGCGCATGGCACCCTCGTATTGTGGCTGCCCTTGTGGGGTT
TCTGTATGACACTGGGGCCCTGGGCCGGCTGCAGGCTCTGGGACTTGTGCCTCTCCTGGCTGGGCAGCTG
TGTGGTGAGGCTGGTGAGGAGGAAGAAGAGGGAAGAGAAGCTGCTTCCTGGGACTTTCCTGAGGAGAGGA
CCCCTGAGCGGGCACAGGGTGGAAGCTTCCGGAGCCTCAGGTCGTGGCTGATCTCCGAGGGCTATGCCAC
AGGCCCTGATGACATCTCCCCCGACTGGTCTCCTGAGCAGTGTCCGCCGGAGCCCATGGAGCCGGCCAGC
CCCGCCCCGACCCCGACCTCGCTGCGGGCACCACGCACCCAACGCACTCCGGGCCGCAGCCCCGCCGCCG
CCATCGAGGAGCCTTGGGGACGCGAAGGGCCAGCCCTGCTGCTGCTGTCGCGCTTTTCCCAGGCCCCTGA
CCCAAGTGGGGCACTTGTGACCGGCCCGGCGCTGTACGGCCTGCTGACCTATGTGACCGGCGCACCGGGC
CCGCCCAGCCCACGTGCACTGCGCATTCTGTCACGCCTCACCTGCAACCCTGCCTGCCTCGAGGCCTTCG
TGCGCAGCTATGGCGCGGCGCTGCTGCGGGCCTGGCTGGTGCTGGGGGTGGCGCCTGACGATTGGCCGGC
ACCACGTGCCCGGCCCACTCTCCACAGCCGGCACCGAGAGCTGGGTGAGTTCCCATACCCACCCGTCTCC
TTGCCCCCATGTGAGTCCCCATCCTCCCCCATGGCTTCCATGGGCCCAGAACCTCACCTTCCCACTCACC
TGTCCTCCCCAGCCCGTCCTCCAGACAACCTGTCACCAGAGTGGGGTGGGGAGCAGGGCGTTCCAGTCCC
TCCATGGGCCCACAGGCAGAGTTCTGCTGTGTCCTCTGCCCTAGCCCTGGGACCCAGATACCCTAACTCT
AGATGCAGCCCCGCGCCCAGGATCTGGGCTGGTCTGTGCTTCTTTCCTGGCTCTGCCATTGGTTCAGCAC
TGTCCTGA

Translation (725 aa):
MAAAKPTLTDSLSFCLAQLAAAAGEALGGEKDPATNETPLSRALLALRTRHIKAAGGIERFRARGGLRPL
LALLRRAAAAGSAPSQAGPGSAPSSAASGASSPAPASGPAPSAVSSSSPTPPVRLRKTLDLALSILADCC
TEGACRTEVRRLGGILPLVTILQCMKTDSIQNRTARALGNLAMEPESCGDIHCAGAVPLLVESLTACQDS
QCLQSVVRALRNLADSPQHRLALAQQGAVRPLAELLATAPDAALTLALVRALLELSRGCSRACAEQLSLG
GGLGPLVSLASHPKRAVREGTILILANLCAQGLIRPALGNAGGVEVLVDELRQRRDPNGASPTSQQPLVR
AVCLLCREAINRARLRDAGGLDLLMGLLRDPRASAWHPRIVAALVGFLYDTGALGRLQALGLVPLLAGQL
CGEAGEEEEEGREAASWDFPEERTPERAQGGSFRSLRSWLISEGYATGPDDISPDWSPEQCPPEPMEPAS
PAPTPTSLRAPRTQRTPGRSPAAAIEEPWGREGPALLLLSRFSQAPDPSGALVTGPALYGLLTYVTGAPG
PPSPRALRILSRLTCNPACLEAFVRSYGAALLRAWLVLGVAPDDWPAPRARPTLHSRHRELGEFPYPPVS
LPPCESPSSPMASMGPEPHLPTHLSSPARPPDNLSPEWGGEQGVPVPPWAHRQSSAVSSALALGPRYPNS
RCSPAPRIWAGLCFFPGSAIGSALS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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