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Report for CCDS42100.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42100.1 Public Homo sapiens 16 MSRB1 24 110 108 CCDS HistoryNCBI Gene:51734Re-query CCDS DB by CCDS ID:42100.1Re-query CCDS DB by GeneID:51734See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Contains selenocysteine

Sequence IDs included in CCDS 42100.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361871.8 ENSP00000355084.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000361871.8Link to Ensembl Protein Viewer:ENSP00000355084.3Re-query CCDS DB by Nucleotide ID:ENST00000361871Re-query CCDS DB by Protein ID:ENSP00000355084
Original member Current member NCBI NM_016332.4 NP_057416.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016332.4Link to Protein Sequence:NP_057416.1Re-query CCDS DB by Nucleotide ID:NM_016332Re-query CCDS DB by Protein ID:NP_057416Link to BLAST:NP_057416.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057416.1 116 Q9NZV6 116 100% 0 0

Chromosomal Locations for CCDS 42100.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 1939112 1939143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1940778 1940892 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1941257 1941405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 1943102 1943156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with U at amino acid position 95

Nucleotide Sequence (351 nt):
ATGTCGTTCTGCAGCTTCTTCGGGGGCGAGGTTTTCCAGAATCACTTTGAACCTGGCGTTTACGTGTGTG
CCAAGTGTGGCTATGAGCTGTTCTCCAGCCGCTCGAAGTATGCACACTCGTCTCCATGGCCGGCGTTCAC
CGAGACCATTCACGCCGACAGCGTGGCCAAGCGTCCGGAGCACAATAGATCTGAAGCCTTGAAGGTGTCC
TGTGGCAAGTGTGGCAATGGGTTGGGCCACGAGTTCCTGAACGACGGCCCCAAGCCGGGGCAGTCCCGAT
TCTGAATATTCAGCAGCTCGCTGAAGTTTGTCCCTAAAGGCAAAGAAACTTCTGCCTCCCAGGGTCACTA
G

Translation (116 aa):
MSFCSFFGGEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRSEALKVS
CGKCGNGLGHEFLNDGPKPGQSRFUIFSSSLKFVPKGKETSASQGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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