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Report for CCDS42052.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42052.2 Public Homo sapiens 15 CALML4 24 110 108 CCDS HistoryNCBI Gene:91860Re-query CCDS DB by CCDS ID:42052.2Re-query CCDS DB by GeneID:91860See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 42052.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000448060.7 ENSP00000400755.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000448060.7Link to Ensembl Protein Viewer:ENSP00000400755.3Re-query CCDS DB by Nucleotide ID:ENST00000448060Re-query CCDS DB by Protein ID:ENSP00000400755
Original member Current member NCBI NM_001031733.3 NP_001026903.3 Accepted alive Link to Nucleotide Sequence:NM_001031733.3Link to Protein Sequence:NP_001026903.3Re-query CCDS DB by Nucleotide ID:NM_001031733Re-query CCDS DB by Protein ID:NP_001026903Link to BLAST:NP_001026903.3

Chromosomal Locations for CCDS 42052.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 68194015 68194112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 68197440 68197628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 68205121 68205151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 68205245 68205247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (321 nt):
ATGGCCAAGTTTCTTTCCCAAGACCAAATTAATGACGGAAATGGAGAGCTGGATTTCTCCACTTTTCTGA
CCATTATGCACATGCAAATAAAACAAGAAGACCCAAAGAAAGAAATTCTTCTAGCCATGTTGATGGTGGA
CAAGGAGAAGAAAGGTTACGTCATGGCGTCCGACCTGCGGTCAAAACTCACGAGTCTGGGGGAGAAGCTC
ACCCACAAGGAAGTGGATGATCTCTTCAGGGAAGCAGATATCGAACCCAATGGCAAAGTGAAGTATGATG
AATTTATCCACAAGATCACCCTTCCTGGACGGGACTATTGA

Translation (106 aa):
MAKFLSQDQINDGNGELDFSTFLTIMHMQIKQEDPKKEILLAMLMVDKEKKGYVMASDLRSKLTSLGEKL
THKEVDDLFREADIEPNGKVKYDEFIHKITLPGRDY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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