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Report for CCDS4200.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4200.2 Public Homo sapiens 5 CDC23 24 110 108 CCDS HistoryNCBI Gene:8697Re-query CCDS DB by CCDS ID:4200.2Re-query CCDS DB by GeneID:8697See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 4200.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394886.7 ENSP00000378350.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394886.7Link to Ensembl Protein Viewer:ENSP00000378350.2Re-query CCDS DB by Nucleotide ID:ENST00000394886Re-query CCDS DB by Protein ID:ENSP00000378350
Original member Current member NCBI NM_004661.4 NP_004652.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004661.4Link to Protein Sequence:NP_004652.2Re-query CCDS DB by Nucleotide ID:NM_004661Re-query CCDS DB by Protein ID:NP_004652Link to BLAST:NP_004652.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004652.2 597 Q9UJX2-1 597 100% 0 0

Chromosomal Locations for CCDS 4200.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 138188978 138189148 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138189633 138189752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138189828 138189906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138191474 138191535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138191862 138191937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138192269 138192388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138192504 138192657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138198199 138198280 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138198426 138198523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138198605 138198782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138201107 138201239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138201343 138201448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138202113 138202155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138206547 138206684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138212991 138213063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 138213152 138213312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1794 nt):
ATGGCTGCGAGTACCTCCATGGTCCCGGTGGCTGTGACGGCGGCAGTGGCGCCTGTCCTGTCCATAAACA
GCGATTTCTCAGATTTGCGGGAAATTAAAAAGCAACTGCTGCTTATTGCGGGCCTTACCCGGGAGCGGGG
CCTACTACACAGTAGCAAATGGTCGGCGGAGTTGGCTTTCTCTCTCCCTGCATTGCCTCTGGCCGAGCTG
CAACCGCCTCCGCCTATTACAGAGGAAGATGCCCAGGATATGGATGCCTATACCCTGGCCAAGGCCTACT
TTGACGTTAAAGAGTATGATCGGGCAGCACATTTCCTGCATGGCTGCAATAGCAAGAAAGCCTATTTTCT
GTATATGTATTCCAGATATCTGTCTGGAGAAAAAAAGAAGGACGATGAAACAGTTGATAGCTTAGGCCCC
CTGGAAAAAGGACAAGTGAAAAATGAGGCGCTTAGAGAATTGAGAGTGGAGCTCAGCAAAAAACACCAAG
CTCGAGAACTTGATGGATTTGGACTTTATCTGTATGGTGTGGTGCTTCGAAAACTGGACTTGGTTAAAGA
GGCCATTGATGTGTTTGTGGAAGCTACTCATGTTTTGCCCTTGCATTGGGGAGCCTGGTTAGAACTCTGT
AACCTGATCACAGACAAAGAGATGCTGAAGTTCCTGTCTTTGCCAGACACCTGGATGAAAGAGTTTTTTC
TGGCTCATATATACACAGAGTTGCAGTTGATAGAGGAGGCCCTGCAAAAGTATCAGAATCTCATTGATGT
GGGCTTCTCTAAGAGCTCGTATATTGTTTCCCAAATTGCAGTTGCCTATCACAATATCAGAGATATTGAC
AAAGCCCTCTCCATTTTTAATGAGCTAAGGAAACAAGACCCTTACAGGATTGAAAATATGGACACATTCT
CCAACCTTCTTTATGTCAGGAGCATGAAATCGGAGTTGAGTTATCTGGCTCATAACCTCTGTGAGATTGA
TAAATATCGTGTAGAAACGTGCTGTGTAATTGGCAATTATTACAGTTTACGTTCTCAGCATGAGAAAGCA
GCCTTATATTTCCAGAGAGCCCTGAAATTAAATCCTCGGTATCTTGGTGCCTGGACACTAATGGGACATG
AGTACATGGAGATGAAGAACACGTCTGCTGCTATCCAGGCTTATAGACATGCCATTGAGGTCAACAAACG
GGACTACAGAGCTTGGTATGGCCTCGGGCAGACCTATGAAATCCTTAAGATGCCATTTTACTGCCTTTAT
TATTATAGACGGGCCCACCAGCTTCGACCCAATGATTCTCGCATGCTGGTTGCTTTAGGAGAATGTTACG
AGAAACTCAATCAACTAGTGGAAGCCAAAAAGTGTTATTGGAGAGCTTACGCCGTGGGAGATGTGGAGAA
AATGGCTCTGGTGAAACTGGCAAAGCTTCATGAACAGTTGACTGAGTCAGAACAGGCTGCCCAGTGTTAC
ATCAAATATATCCAAGATATCTATTCCTGTGGGGAAATAGTAGAACACTTGGAGGAAAGCACTGCCTTTC
GCTATCTGGCCCAGTACTATTTTAAGTGCAAACTGTGGGATGAAGCTTCAACTTGTGCACAAAAGTGTTG
TGCATTTAATGATACCCGGGAAGAAGGTAAGGCCTTACTCCGGCAAATCCTACAGCTTCGGAACCAAGGC
GAGACTCCTACCACCGAGGTGCCTGCTCCCTTTTTCCTACCTGCTTCACTCTCTGCTAACAATACCCCCA
CACGCAGAGTTTCTCCACTCAACTTGTCTTCTGTCACGCCATAG

Translation (597 aa):
MAASTSMVPVAVTAAVAPVLSINSDFSDLREIKKQLLLIAGLTRERGLLHSSKWSAELAFSLPALPLAEL
QPPPPITEEDAQDMDAYTLAKAYFDVKEYDRAAHFLHGCNSKKAYFLYMYSRYLSGEKKKDDETVDSLGP
LEKGQVKNEALRELRVELSKKHQARELDGFGLYLYGVVLRKLDLVKEAIDVFVEATHVLPLHWGAWLELC
NLITDKEMLKFLSLPDTWMKEFFLAHIYTELQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDID
KALSIFNELRKQDPYRIENMDTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKA
ALYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLY
YYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHEQLTESEQAAQCY
IKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDEASTCAQKCCAFNDTREEGKALLRQILQLRNQG
ETPTTEVPAPFFLPASLSANNTPTRRVSPLNLSSVTP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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