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Report for CCDS41965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41965.1 Public Homo sapiens 14 MAX 24 110 108 CCDS HistoryNCBI Gene:4149Re-query CCDS DB by CCDS ID:41965.1Re-query CCDS DB by GeneID:4149See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 41965.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394606.6 ENSP00000378104.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000394606.6Link to Ensembl Protein Viewer:ENSP00000378104.2Re-query CCDS DB by Nucleotide ID:ENST00000394606Re-query CCDS DB by Protein ID:ENSP00000378104
Original member Current member EBI ENST00000553928.5 ENSP00000451907.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000553928.5Link to Ensembl Protein Viewer:ENSP00000451907.1Re-query CCDS DB by Nucleotide ID:ENST00000553928Re-query CCDS DB by Protein ID:ENSP00000451907
Original member Current member EBI ENST00000556979.5 ENSP00000452378.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000556979.5Link to Ensembl Protein Viewer:ENSP00000452378.1Re-query CCDS DB by Nucleotide ID:ENST00000556979Re-query CCDS DB by Protein ID:ENSP00000452378
Original member Current member EBI ENST00000618858.4 ENSP00000480127.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000618858.4Link to Ensembl Protein Viewer:ENSP00000480127.1Re-query CCDS DB by Nucleotide ID:ENST00000618858Re-query CCDS DB by Protein ID:ENSP00000480127
Original member Current member NCBI NM_145113.3 NP_660088.1 Accepted alive Link to Nucleotide Sequence:NM_145113.3Link to Protein Sequence:NP_660088.1Re-query CCDS DB by Nucleotide ID:NM_145113Re-query CCDS DB by Protein ID:NP_660088Link to BLAST:NP_660088.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_660088.1 103 P61244-3 103 100% 0 0

Chromosomal Locations for CCDS 41965.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 65077412 65077428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65077913 65078036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65093708 65093815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65101546 65101572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 65102304 65102339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (312 nt):
ATGAGCGATAACGATGACATCGAGGTGGAGAGCGACGAAGAGCAACCGAGGTTTCAATCTGCGGCTGACA
AACGGGCTCATCATAATGCACTGGAACGAAAACGTAGGGACCACATCAAAGACAGCTTTCACAGTTTGCG
GGACTCAGTCCCATCACTCCAAGGAGAGAAGGCATCCCGGGCCCAAATCCTAGACAAAGCCACAGAATAT
ATCCAGTATATGCGAAGGAAAAACCACACACACCAGCAAGATATTGACGACCTCAAGCGGCAGAATGCTC
TTCTGGAGCAGCAAGGGGAAAGCGAGAGCTGA

Translation (103 aa):
MSDNDDIEVESDEEQPRFQSAADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEY
IQYMRRKNHTHQQDIDDLKRQNALLEQQGESES


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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