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Report for CCDS41960.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41960.1 Public Homo sapiens 14 OTX2 24 110 108 CCDS HistoryNCBI Gene:5015Re-query CCDS DB by CCDS ID:41960.1Re-query CCDS DB by GeneID:5015See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41960.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339475.10 ENSP00000343819.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000339475.10Link to Ensembl Protein Viewer:ENSP00000343819.5Re-query CCDS DB by Nucleotide ID:ENST00000339475Re-query CCDS DB by Protein ID:ENSP00000343819
Original member Current member EBI ENST00000408990.8 ENSP00000386185.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000408990.8Link to Ensembl Protein Viewer:ENSP00000386185.3Re-query CCDS DB by Nucleotide ID:ENST00000408990Re-query CCDS DB by Protein ID:ENSP00000386185
Original member Current member EBI ENST00000555804.2 ENSP00000451272.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000555804.2Link to Ensembl Protein Viewer:ENSP00000451272.2Re-query CCDS DB by Nucleotide ID:ENST00000555804Re-query CCDS DB by Protein ID:ENSP00000451272
Original member Current member EBI ENST00000555006.5 ENSP00000452336.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000555006.5Link to Ensembl Protein Viewer:ENSP00000452336.1Re-query CCDS DB by Nucleotide ID:ENST00000555006Re-query CCDS DB by Protein ID:ENSP00000452336
Original member Current member EBI ENST00000673035.1 ENSP00000500061.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000673035.1Link to Ensembl Protein Viewer:ENSP00000500061.1Re-query CCDS DB by Nucleotide ID:ENST00000673035Re-query CCDS DB by Protein ID:ENSP00000500061
Original member Current member EBI ENST00000685244.1 ENSP00000508798.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000685244.1Link to Ensembl Protein Viewer:ENSP00000508798.1Re-query CCDS DB by Nucleotide ID:ENST00000685244Re-query CCDS DB by Protein ID:ENSP00000508798
Original member Current member NCBI NM_001270523.2 NP_001257452.1 Accepted alive Link to Nucleotide Sequence:NM_001270523.2Link to Protein Sequence:NP_001257452.1Re-query CCDS DB by Nucleotide ID:NM_001270523Re-query CCDS DB by Protein ID:NP_001257452Link to BLAST:NP_001257452.1
Original member Current member NCBI NM_001270524.2 NP_001257453.1 Accepted alive Link to Nucleotide Sequence:NM_001270524.2Link to Protein Sequence:NP_001257453.1Re-query CCDS DB by Nucleotide ID:NM_001270524Re-query CCDS DB by Protein ID:NP_001257453Link to BLAST:NP_001257453.1
Original member Current member NCBI NM_172337.3 NP_758840.1 Accepted alive Link to Nucleotide Sequence:NM_172337.3Link to Protein Sequence:NP_758840.1Re-query CCDS DB by Nucleotide ID:NM_172337Re-query CCDS DB by Protein ID:NP_758840Link to BLAST:NP_758840.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001257452.1 289 P32243-1 289 100% 0 0
NP_001257453.1 289 P32243-1 289 100% 0 0
NP_758840.1 289 P32243-1 289 100% 0 0

Chromosomal Locations for CCDS 41960.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 56801735 56802355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56804188 56804339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 56805360 56805456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGATGTCTTATCTTAAGCAACCGCCTTACGCAGTCAATGGGCTGAGTCTGACCACTTCGGGTATGGACT
TGCTGCACCCCTCCGTGGGCTACCCGGCCACCCCCCGGAAACAGCGCCGGGAGAGGACGACGTTCACTCG
GGCGCAGCTAGATGTGCTGGAAGCACTGTTTGCCAAGACCCGGTACCCAGACATCTTCATGCGAGAGGAG
GTGGCACTGAAAATCAACTTGCCCGAGTCGAGGGTGCAGGTATGGTTTAAGAATCGAAGAGCTAAGTGCC
GCCAACAACAGCAACAACAGCAGAATGGAGGTCAAAACAAAGTGAGACCTGCCAAAAAGAAGACATCTCC
AGCTCGGGAAGTGAGTTCAGAGAGTGGAACAAGTGGCCAATTCACTCCCCCCTCTAGCACCTCAGTCCCG
ACCATTGCCAGCAGCAGTGCTCCTGTGTCTATCTGGAGCCCAGCTTCCATCTCCCCACTGTCAGATCCCT
TGTCCACCTCCTCTTCCTGCATGCAGAGGTCCTATCCCATGACCTATACTCAGGCTTCAGGTTATAGTCA
AGGATATGCTGGCTCAACTTCCTACTTTGGGGGCATGGACTGTGGATCATATTTGACCCCTATGCATCAC
CAGCTTCCCGGACCAGGGGCCACACTCAGTCCCATGGGTACCAATGCAGTCACCAGCCATCTCAATCAGT
CCCCAGCTTCTCTTTCCACCCAGGGATATGGAGCTTCAAGCTTGGGTTTTAACTCAACCACTGATTGCTT
GGATTATAAGGACCAAACTGCCTCCTGGAAGCTTAACTTCAATGCTGACTGCTTGGATTATAAAGATCAG
ACATCCTCGTGGAAATTCCAGGTTTTGTGA

Translation (289 aa):
MMSYLKQPPYAVNGLSLTTSGMDLLHPSVGYPATPRKQRRERTTFTRAQLDVLEALFAKTRYPDIFMREE
VALKINLPESRVQVWFKNRRAKCRQQQQQQQNGGQNKVRPAKKKTSPAREVSSESGTSGQFTPPSSTSVP
TIASSSAPVSIWSPASISPLSDPLSTSSSCMQRSYPMTYTQASGYSQGYAGSTSYFGGMDCGSYLTPMHH
QLPGPGATLSPMGTNAVTSHLNQSPASLSTQGYGASSLGFNSTTDCLDYKDQTASWKLNFNADCLDYKDQ
TSSWKFQVL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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