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Report for CCDS41934.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41934.1 Public Homo sapiens 14 TM9SF1 24 110 108 CCDS HistoryNCBI Gene:10548Re-query CCDS DB by CCDS ID:41934.1Re-query CCDS DB by GeneID:10548See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41934.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396854.8 ENSP00000380063.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396854.8Link to Ensembl Protein Viewer:ENSP00000380063.4Re-query CCDS DB by Nucleotide ID:ENST00000396854Re-query CCDS DB by Protein ID:ENSP00000380063
Original member Current member NCBI NM_001014842.3 NP_001014842.1 Accepted alive Link to Nucleotide Sequence:NM_001014842.3Link to Protein Sequence:NP_001014842.1Re-query CCDS DB by Nucleotide ID:NM_001014842Re-query CCDS DB by Protein ID:NP_001014842Link to BLAST:NP_001014842.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001014842.1 489 O15321-2 489 100% 0 0

Chromosomal Locations for CCDS 41934.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 24190337 24190653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24192171 24192356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24192648 24193269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24194675 24195019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1470 nt):
ATGACAGTCGTAGGGAACCCTCGAAGTTGGAGCTGCCAGTGGTTGCCAATCCTGATACTGTTGCTGGGCA
CAGGCCATGGGCCAGGGGTGGAAGGCGTGACACACTACAAGGCCGGCGACCCTGTTATTCTGTATGTCAA
CAAAGTGGGACCCTACCATAACCCTCAGGAAACTTACCACTACTATCAGCTTCCAGTCTGCTGCCCTGAG
AAGATACGTCACAAAAGCCTTAGCCTGGGTGAAGTGCTGGATGGGGACCGAATGGCTGAGTCTTTGTATG
AGATCCGCTTTCGGGAAAACGTGGAGAAGAGAATTCTGTGCCACATGCAGCTCAGTTCTGCACAGGTGGA
GCAGCTGCGCCAGGCCATTGAAGAACTGTACTACTTTGAATTTGTGGTAGATGACTTGCCAATCCGGGGC
TTTGTGGGCTACATGGAGGAGAGTGGTTTCCTGCCACACAGCCACAAGATAGGACTCTGGACCCATTTGG
ACTTCCACCTAGAATTCCATGGAGACCGAATTATATTTGCCAATGTTTCAGTGCGGGACGTCAAGCCCCA
CAGCTTGGATGGGTTACGACCTGACGAGTTCCTAGGCCTTACCCACACTTATAGCGTGCGCTGGTCTGAG
ACTTCAGTGGAGCGTCGGAGTGACAGGCGCCGTGGTGACGATGGTGGTTTCTTTCCTCGAACACTGGAAA
TCCATTGGTTGTCCATCATCAACTCCATGGTGCTTGTGTTTTTACTGGTGGGTTTTGTGGCTGTCATTCT
AATGCGTGTGCTTCGGAATGACCTGGCTCGGTACAACTTAGATGAGGAGACCACCTCTGCAGGTTCTGGT
GATGACTTTGACCAGGGTGACAATGGCTGGAAAATTATCCATACAGATGTCTTCCGCTTCCCCCCATACC
GTGGTCTGCTCTGTGCTGTGCTTGGCGTGGGTGCCCAGTTCCTGGCCCTTGGCACTGGCATTATTGTCAT
GGCACTGCTGGGCATGTTCAATGTGCACCGTCATGGGGCCATTAACTCAGCAGCCATCTTGTTGTATGCC
CTGACCTGCTGCATCTCTGGCTACGTGTCCAGCCACTTCTACCGGCAGATTGGAGGCGAGCGTTGGGTGT
GGAACATCATTCTCACCACCAGTCTCTTCTCTGTGCCTTTCTTCCTGACGTGGAGTGTGGTGAACTCAGT
GCATTGGGCCAATGGTTCGACACAGGCTCTGCCAGCCACAACCATCCTGCTGCTTCTGACGGTTTGGCTG
CTGGTGGGCTTTCCCCTCACTGTCATTGGAGGCATCTTTGGGAAGAACAACGCCAGCCCCTTTGATGCAC
CCTGTCGCACCAAGAACATCGCCCGGGAGATTCCACCCCAGCCCTGGTACAAGTCTACTGTCATCCACAT
GACTGTTGGAGGCTTCCTGCCTTTCAGGTATCCTCCCTTTATTCCATGGCTATTACTGTCAGGTTCCTGA

Translation (489 aa):
MTVVGNPRSWSCQWLPILILLLGTGHGPGVEGVTHYKAGDPVILYVNKVGPYHNPQETYHYYQLPVCCPE
KIRHKSLSLGEVLDGDRMAESLYEIRFRENVEKRILCHMQLSSAQVEQLRQAIEELYYFEFVVDDLPIRG
FVGYMEESGFLPHSHKIGLWTHLDFHLEFHGDRIIFANVSVRDVKPHSLDGLRPDEFLGLTHTYSVRWSE
TSVERRSDRRRGDDGGFFPRTLEIHWLSIINSMVLVFLLVGFVAVILMRVLRNDLARYNLDEETTSAGSG
DDFDQGDNGWKIIHTDVFRFPPYRGLLCAVLGVGAQFLALGTGIIVMALLGMFNVHRHGAINSAAILLYA
LTCCISGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPATTILLLLTVWL
LVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTVGGFLPFRYPPFIPWLLLSGS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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