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Report for CCDS41887.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41887.1 Public Homo sapiens 13 PHF11 24 110 108 CCDS HistoryNCBI Gene:51131Re-query CCDS DB by CCDS ID:41887.1Re-query CCDS DB by GeneID:51131See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41887.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357596.7 ENSP00000350209.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357596.7Link to Ensembl Protein Viewer:ENSP00000350209.3Re-query CCDS DB by Nucleotide ID:ENST00000357596Re-query CCDS DB by Protein ID:ENSP00000350209
Original member Current member EBI ENST00000488958.5 ENSP00000417539.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000488958.5Link to Ensembl Protein Viewer:ENSP00000417539.1Re-query CCDS DB by Nucleotide ID:ENST00000488958Re-query CCDS DB by Protein ID:ENSP00000417539
Original member NCBI NM_001040444.2 NP_001035534.1 Updated not alive Link to Nucleotide Sequence:NM_001040444.2Link to Protein Sequence:NP_001035534.1Re-query CCDS DB by Nucleotide ID:NM_001040444Re-query CCDS DB by Protein ID:NP_001035534
Current member NCBI NM_001040444.3 NP_001035534.1 Accepted alive Link to Nucleotide Sequence:NM_001040444.3Link to Protein Sequence:NP_001035534.1Re-query CCDS DB by Nucleotide ID:NM_001040444Re-query CCDS DB by Protein ID:NP_001035534Link to BLAST:NP_001035534.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035534.1 292 Q9UIL8-2 292 100% 0 0

Chromosomal Locations for CCDS 41887.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49506658 49506756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49513059 49513166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49518018 49518151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49520894 49520940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49522043 49522107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49523175 49523241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49524085 49524216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49526387 49526458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49528511 49528665 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (879 nt):
ATGGAAAAAAGGACATGTGCACTCTGCCCCAAAGATGTCGAATATAATGTCCTATACTTTGCACAATCAG
AGAATATAGCTGCTCATGAGAATTGTTTGCTGTATTCTTCAGGACTTGTGGAATGTGAGGATCAGGATCC
ACTTAATCCTGATAGAAGTTTTGATGTGGAATCAGTAAAGAAAGAAATCCAGAGAGGAAGGAAGTTGAAA
TGCAAATTTTGTCATAAAAGAGGAGCCACCGTGGGATGTGATTTAAAAAACTGTAACAAGAATTACCACT
TTTTCTGTGCCAAGAAGGACGACGCAGTTCCACAGTCTGATGGAGTTCGAGGAATTTATAAACTGCTTTG
CCAGCAACATGCTCAATTCCCGATCATCGCTCAAAGTGCTAAATTTTCAGGAGTGAAAAGAAAAAGAGGA
AGGAAGAAACCCCTCTCAGGCAATCATGTACAGCCACCCGAAACAATGAAATGTAATACATTCATAAGAC
AAGTGAAAGAAGAGCATGGCAGACACACAGATGCAACTGTGAAAGTTCCTTTTCTTAAGAAATGCAAGGA
AGCAGGACTTCTTAATTACTTACTTGAAGAAATATTAGACAAAGTTCATTCAATTCCAGAAAAACTCATG
GATGAGACTACTTCAGAATCAGACTATGAAGAAATCGGGAGTGCACTTTTTGACTGTAGATTGTTCGAAG
ACACATTTGTAAATTTTCAAGCAGCAATAGAGAAAAAAATTCATGCATCTCAACAAAGGTGGCAGCAGTT
GAAGGAAGAGATTGAGCTACTTCAGGACTTAAAACAAACCTTGTGCTCTTTTCAAGAAAATAGAGATCTT
ATGTCAAGTTCTACATCAATATCATCCCTGTCTTATTAG

Translation (292 aa):
MEKRTCALCPKDVEYNVLYFAQSENIAAHENCLLYSSGLVECEDQDPLNPDRSFDVESVKKEIQRGRKLK
CKFCHKRGATVGCDLKNCNKNYHFFCAKKDDAVPQSDGVRGIYKLLCQQHAQFPIIAQSAKFSGVKRKRG
RKKPLSGNHVQPPETMKCNTFIRQVKEEHGRHTDATVKVPFLKKCKEAGLLNYLLEEILDKVHSIPEKLM
DETTSESDYEEIGSALFDCRLFEDTFVNFQAAIEKKIHASQQRWQQLKEEIELLQDLKQTLCSFQENRDL
MSSSTSISSLSY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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