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Report for CCDS41859.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41859.1 Public Homo sapiens 12 TMEM132B 24 110 108 CCDS HistoryNCBI Gene:114795Re-query CCDS DB by CCDS ID:41859.1Re-query CCDS DB by GeneID:114795See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 41859.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000299308.7 ENSP00000299308.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000299308.7Link to Ensembl Protein Viewer:ENSP00000299308.3Re-query CCDS DB by Nucleotide ID:ENST00000299308Re-query CCDS DB by Protein ID:ENSP00000299308
Original member Current member NCBI NM_052907.3 NP_443139.2 Accepted alive Link to Nucleotide Sequence:NM_052907.3Link to Protein Sequence:NP_443139.2Re-query CCDS DB by Nucleotide ID:NM_052907Re-query CCDS DB by Protein ID:NP_443139Link to BLAST:NP_443139.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_443139.2 1078 Q14DG7-1 1078 100% 0 0

Chromosomal Locations for CCDS 41859.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 125326624 125326675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 125349452 125350343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 125415531 125415677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 125519439 125519625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 125583851 125583994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 125644076 125644281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 125650683 125650953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 125652441 125652632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 125653565 125654710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3237 nt):
ATGTTTGGTGCAGCATCCAGAATGGACACCACTGCTGTCTGCACCGGGGGAGTGACAGAGAGTCGAGGGA
TTGTGGATAGCCTGCAGAAGTTTTCCTCGCTCCCTGCTTACCTCCCCACGAACTTGCACATCTCCAATGC
AGAGGAGTCCTTTTTCCTTAAAGAAGCCAACCAAGACCTCACAAGGAACTCCAGTCTGCAGGCCCGGGTG
GAGCCATTCTTCATCTACCGAGCCAGGACACCCCCTATTATCAATGCCAGCTATGGCCCATTTTCAGTGG
AGAAGATAATCCCCCAGGAGCTCCTGTTGACATCTACAGCCTTTGGAAACATGGACAAATTTCCCTTCAA
CTGGAAATTGAAATCCCACATCCTTGACAGCTCCATCTACTCCAACAGACCCAAAGTGCAGACCTTGTTT
TATGTCACTGGCATGGGCTGGGATGACAGTGACCTTACGGAAGATCTACCCTGTGTCAAGATGTTTGCTT
TCCCTGAGGCCAGGGAAGTGGCAGCCAGCTGTCGGCTGCAAGGGGCCCCAGGGCTGTGTGTGGCTGAGCT
GGAGCTGCTGCCCGAGTGGTTCAGCTCAGGCCTGGACCTGGAACCAGAGGAGGAGATCCCAGCCCTGCTC
GGGGGCACCACGATGGAGCTCTTCTTCACGCTCTACCCAGCTGACAAGGCTGGCCAGTGTCCTCTGGAGG
AGGAAGGCAAGTGGGAGAACAATATCCACTCGGGCCTGGAGAGCCCCCAGCAAGCGTTTCCAGCCCGAGA
GAGGATTGGGAGTGTGGTGGTCTACCCAACCCAAGATGATCTGAAGTGGTCCCTGGTGAGCTTGGACGAG
AATGTGGTCATCTCGGTACCTCTGAATCTAGTCCGGGAAGGGGACACGGCCACCTTTTTGGTCTCTCTGA
CCAGTAGCTCTGTGGCAGACCAGTTCACTCTTAGAATTAAGGCGGCAGCAGGTGTGAAGATAACGGCAGT
GAGAGTCAGCAGTGAGGACCAATGGGCAGTCCAGGAGGAAATTGATAATGGCAGCACTCAGACGTCGGCC
ACCCTCACCTGCATGGGCCATCGCCCGGACACGCAGAGCAGGGTAAATGGATCCTTCTATGAGATCTTGC
AAGTGGACTTTGGAATTGATAATAGCAGTGACCTGGCTGGGGCCCAGCAGATTACCTGGCAGGTGGAGTA
CCCGATTGAGGACTCCATGAGTGAGCTGGTCGTCTCCGAGATCTTCGTCAGCCAGACAACCTTCGTGGGC
ATCGTCCCTCTTGCCATGGACACCGAGGTTTTGAACACTGCCATTCTCACTGGAAAGCCTGTTTCAGTTC
CTGTCAAAGTCGTGGGGGTCCAGGAGGATGGTTCTGTGGTCGATGTGTCTGAGTCTGTGGAATGCAAGTC
TGCCGATGAAGATGTCATTAAGGTTTCCAACAACTGTGATTCCATTTTTGTGAATGGGAAGGAAATGAAG
AGCAAAGTGGACACGATTGTGAACTTCACCCACCAGCACTTCACCTCCCAGTTCGAGGTCACTGTCTGGG
CACCCAGGCTCCCCCTGCAGATTGAGATCTCAGACACCGAGCTGAGCCAGATCAAGGGCTGGAGGATCCC
GGTTGCTGCCAACAGAAGGCCTACCCGGGAAAGCGATGACGAGGACGATGAGGAGAAGAAGGGACGAGGC
TGCTCCCTGCAGTACCAGCACGCCACAGTGCGTGTCCTCACCCAGTTTGTGGCCGAGTCACCTGACTTAG
GGCAGCTGACCTACATGCTGGGCCCCGACTGGCAGTTTGACATCACTGACCTTGTGACCGAGTTCATGAA
GGTGGAGGAGCCGAAAATCGCTCAGTTACAGGACGGCAGGACCCTGGCTGGTCGGGAGCCGGGAATAACC
ACGGTGCAGGTCCTCTCGCCGTTGTCTGACTCCATCCTGGCTGAGAAGACGGTGATTGTCCTGGATGACC
GAGTCACCATCGCGGAGCTGGGAGTGCAGCTCGTAGCTGGCATGTCTCTCTCCCTGCAGCCACACCGAGC
AGACAAAAGGGCCATCGTCTCCACAGCTGCTGCCCTGGATGTTCTTCAGTCCCCACAGCAGGAAGCAATA
GTAAGTTCTTGGATTTTGTTCAGTGATGGTTCGGTGACACCTTTAGACATTTACGATCCTAAGGATTATT
CTGTTACTGTCTCATCATTGGATGAAATGGTGGTGTCTGTCCAGGCAAACCTTGAGTCCAAATGGCCAAT
TGTGGTTGCAGAGGGTGAAGGACAAGGGCCTTTGATTAAGTTAGAAATGATGATAAGTGAACCTTGTCAG
AAGACCAAGAGGAAGAGTGTTCTTGCCGTGGGTAAAGGAAATGTCAAGGTCAAATTCGAACCAAGTAGTG
ATGAGCACCAAGGAGGCAGCAATGATATTGAGGGCATAAATCGGGAATATAAAGACCACCTCAGTAATTC
CATAGAGCGCGAAGGAAACCAGGAGAGAGCAGTCCAGGAATGGTTCCACCGTGGCACACCTGTTGGCCAA
GAGGAAAGTACCAACAAAAGCACAACCCCCCAGTCTCCCATGGAAGGGAAGAATAAGTTACTCAAAAGTG
GTGGTCCAGATGCCTTTACAAGCTTCCCCACTCAAGGGAAGTCACCGGACCCCAATAATCCTAGTGACCT
CACAGTGACCTCAAGGGGGCTAACGGACTTGGAGATTGGCATGTATGCCTTGCTCTGCGTCTTCTGTCTG
GCCATTCTGGTCTTCTTGATCAACTGCGTGGCGTTTGCCTGGAAATACAGACACAAAAGGTTTGCTGTGA
GTGAGCAGGGCAACATCCCCCATTCCCACGACTGGGTCTGGCTTGGGAATGAAGTGGAACTTTTGGAGAA
CCCTGTTGACATTACACTCCCATCAGAGGAGTGCACAACCATGATAGACAGGGGCCTGCAGTTCGAGGAG
AGGAACTTCCTTCTGAATGGCAGTTCCCAGAAGACTTTTCATAGTCAACTACTCAGACCCTCTGACTATG
TCTATGAGAAAGAAATTAAAAATGAACCTATGAATTCTTCGGGCCCAAAGAGGAAGAGAGTCAAGTTCAC
TTCCTACACCACCATCCTCCCAGAGGACGGCGGCCCATACACCAACTCCATCCTGTTTGACAGCGATGAT
AACATCAAGTGGGTCTGCCAAGATATGGGGCTGGGGGATTCACAGGACTTTAGAGACTATATGGAAAGTC
TGCAAGACCAGATGTAA

Translation (1078 aa):
MFGAASRMDTTAVCTGGVTESRGIVDSLQKFSSLPAYLPTNLHISNAEESFFLKEANQDLTRNSSLQARV
EPFFIYRARTPPIINASYGPFSVEKIIPQELLLTSTAFGNMDKFPFNWKLKSHILDSSIYSNRPKVQTLF
YVTGMGWDDSDLTEDLPCVKMFAFPEAREVAASCRLQGAPGLCVAELELLPEWFSSGLDLEPEEEIPALL
GGTTMELFFTLYPADKAGQCPLEEEGKWENNIHSGLESPQQAFPARERIGSVVVYPTQDDLKWSLVSLDE
NVVISVPLNLVREGDTATFLVSLTSSSVADQFTLRIKAAAGVKITAVRVSSEDQWAVQEEIDNGSTQTSA
TLTCMGHRPDTQSRVNGSFYEILQVDFGIDNSSDLAGAQQITWQVEYPIEDSMSELVVSEIFVSQTTFVG
IVPLAMDTEVLNTAILTGKPVSVPVKVVGVQEDGSVVDVSESVECKSADEDVIKVSNNCDSIFVNGKEMK
SKVDTIVNFTHQHFTSQFEVTVWAPRLPLQIEISDTELSQIKGWRIPVAANRRPTRESDDEDDEEKKGRG
CSLQYQHATVRVLTQFVAESPDLGQLTYMLGPDWQFDITDLVTEFMKVEEPKIAQLQDGRTLAGREPGIT
TVQVLSPLSDSILAEKTVIVLDDRVTIAELGVQLVAGMSLSLQPHRADKRAIVSTAAALDVLQSPQQEAI
VSSWILFSDGSVTPLDIYDPKDYSVTVSSLDEMVVSVQANLESKWPIVVAEGEGQGPLIKLEMMISEPCQ
KTKRKSVLAVGKGNVKVKFEPSSDEHQGGSNDIEGINREYKDHLSNSIEREGNQERAVQEWFHRGTPVGQ
EESTNKSTTPQSPMEGKNKLLKSGGPDAFTSFPTQGKSPDPNNPSDLTVTSRGLTDLEIGMYALLCVFCL
AILVFLINCVAFAWKYRHKRFAVSEQGNIPHSHDWVWLGNEVELLENPVDITLPSEECTTMIDRGLQFEE
RNFLLNGSSQKTFHSQLLRPSDYVYEKEIKNEPMNSSGPKRKRVKFTSYTTILPEDGGPYTNSILFDSDD
NIKWVCQDMGLGDSQDFRDYMESLQDQM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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