NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS41711.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41711.1 Public Homo sapiens 11 POGLUT3 24 110 108 CCDS HistoryNCBI Gene:143888Re-query CCDS DB by CCDS ID:41711.1Re-query CCDS DB by GeneID:143888See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41711.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323468.10 ENSP00000315386.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000323468.10Link to Ensembl Protein Viewer:ENSP00000315386.5Re-query CCDS DB by Nucleotide ID:ENST00000323468Re-query CCDS DB by Protein ID:ENSP00000315386
Original member Current member NCBI NM_153705.5 NP_714916.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153705.5Link to Protein Sequence:NP_714916.3Re-query CCDS DB by Nucleotide ID:NM_153705Re-query CCDS DB by Protein ID:NP_714916Link to BLAST:NP_714916.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_714916.3 507 Q7Z4H8-1 507 100% 0 0

Chromosomal Locations for CCDS 41711.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 108474827 108474952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108477607 108477711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108479301 108479495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108481180 108481376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108482006 108482222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108486157 108486440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108490970 108491167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108498165 108498366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1524 nt):
ATGCGCCGCCTCCCGCGGGCCCTGCTGCTGCAGCTGCGCCTCGCCCTGCTGGTGGCCGCGGGGGCCCCGG
AGGTGCTGGTCAGCGCGCCGCGGAGCCTGGTGTGGGGGCCCGGGCTGCAGGCGGCCGTCGTCCTGCCGGT
CCGCTATTTCTACCTGCAGGCGGTCAACTCGGAGGGCCAGAACCTCACTCGCTCTCCCGCAGGTGAAACA
CCATTCAAAGTCGTAGTCAAATCTCTTTCACCTAAAGAGTTGGTCCGGATACATGTCCCTAAACCTTTGG
ACAGGAATGATGGAACATTTTTGATGAGATATAGGATGTATGAAACTGTCGATGAAGGCCTGAAGATAGA
GGTCCTTTATGGTGATGAACATGTGGCTCAGTCTCCCTATATTTTGAAAGGACCAGTGTACCATGAGTAC
TGTGAGTGTCCGGAAGATCCTCAGGCCTGGCAGAAGACTCTTTCTTGTCCAACCAAGGAACCACAGATTG
CAAAAGATTTTGCTTCCTTTCCCAGCATCAATCTCCAGCAAATGCTAAAAGAAGTCCCCAAAAGGTTTGG
GGATGAGAGAGGTGCCATTGTTCATTACACGATTCTCAATAACCATGTTTACCGGAGATCTTTAGGGAAA
TACACAGACTTCAAGATGTTCTCTGATGAGATTTTGTTATCATTGACAAGAAAGGTCCTTCTCCCAGATT
TAGAATTTTATGTTAATCTTGGAGATTGGCCCTTGGAGCATCGAAAAGTCAATGGAACCCCTAGCCCCAT
ACCTATCATTTCATGGTGTGGCTCTCTGGATTCAAGAGATGTTGTCCTTCCAACGTATGACATCACCCAC
TCCATGCTTGAAGCCATGCGGGGTGTTACAAATGATCTCCTCTCTATTCAGGGAAATACAGGGCCTTCCT
GGATCAATAAAACAGAGAGAGCTTTCTTCAGAGGTAGAGACAGCCGAGAGGAGAGGCTCCAGTTGGTACA
GCTGTCCAAAGAAAATCCTCAGCTACTAGATGCAGGAATTACAGGATATTTCTTTTTCCAAGAGAAAGAA
AAGGAGCTTGGAAAAGCCAAGTTGATGGGTTTCTTTGATTTCTTTAAGTACAAGTATCAAGTAAATGTGG
ATGGGACCGTGGCTGCTTACAGATATCCATATCTCATGCTGGGCGACAGTCTGGTTTTAAAGCAGGACTC
GCCATATTATGAACATTTCTACATGGCACTAGAACCTTGGAAGCATTATGTTCCAATTAAAAGAAATCTG
AGTGATTTATTAGAGAAAGTTAAATGGGCTAAGGAAAATGATGAAGAAGCCAAGAAGATTGCAAAAGAAG
GACAGTTGATGGCTAGGGACCTACTACAGCCACACAGGCTTTACTGCTACTATTACCAAGTACTGCAGAA
ATATGCCGAGCGCCAGTCCAGCAAACCCGAAGTACGTGATGGAATGGAACTTGTTCCTCAGCCAGAAGAT
AGCACAGCCATCTGCCAGTGCCACAGGAAAAAGCCTTCAAGAGAAGAACTTTGA

Translation (507 aa):
MRRLPRALLLQLRLALLVAAGAPEVLVSAPRSLVWGPGLQAAVVLPVRYFYLQAVNSEGQNLTRSPAGET
PFKVVVKSLSPKELVRIHVPKPLDRNDGTFLMRYRMYETVDEGLKIEVLYGDEHVAQSPYILKGPVYHEY
CECPEDPQAWQKTLSCPTKEPQIAKDFASFPSINLQQMLKEVPKRFGDERGAIVHYTILNNHVYRRSLGK
YTDFKMFSDEILLSLTRKVLLPDLEFYVNLGDWPLEHRKVNGTPSPIPIISWCGSLDSRDVVLPTYDITH
SMLEAMRGVTNDLLSIQGNTGPSWINKTERAFFRGRDSREERLQLVQLSKENPQLLDAGITGYFFFQEKE
KELGKAKLMGFFDFFKYKYQVNVDGTVAAYRYPYLMLGDSLVLKQDSPYYEHFYMALEPWKHYVPIKRNL
SDLLEKVKWAKENDEEAKKIAKEGQLMARDLLQPHRLYCYYYQVLQKYAERQSSKPEVRDGMELVPQPED
STAICQCHRKKPSREEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH