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Report for CCDS41710.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41710.1 Public Homo sapiens 11 NPAT 24 110 108 CCDS HistoryNCBI Gene:4863Re-query CCDS DB by CCDS ID:41710.1Re-query CCDS DB by GeneID:4863See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41710.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000278612.9 ENSP00000278612.8 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000278612.9Link to Ensembl Protein Viewer:ENSP00000278612.8Re-query CCDS DB by Nucleotide ID:ENST00000278612Re-query CCDS DB by Protein ID:ENSP00000278612
Original member Current member NCBI NM_002519.3 NP_002510.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002519.3Link to Protein Sequence:NP_002510.2Re-query CCDS DB by Nucleotide ID:NM_002519Re-query CCDS DB by Protein ID:NP_002510Link to BLAST:NP_002510.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002510.2 1427 Q14207 1427 100% 0 0

Chromosomal Locations for CCDS 41710.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 108158942 108159019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108160880 108162014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108162120 108162180 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108169744 108169852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108169928 108170043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108172199 108173851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108176246 108176374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108176994 108177090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108185232 108185319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108185403 108185494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108186482 108186569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108188098 108188179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108189106 108189330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108190460 108190500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108192118 108192190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108193957 108194017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108197302 108197420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 108222500 108222536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4284 nt):
ATGTTGTTACCCTCGGACGTAGCCCGGCTTGTATTGGGTTACTTACAGCAAGAAAACCTCATTTCTACCT
GCCAGACTTTTATTTTGGAAAGTTCAGATTTAAAAGAATATGCAGAACATTGTACAGATGAAGGGTTTAT
TCCAGCCTGCTTACTGTCCTTATTTGGAAAAAACTTGACAACAATTTTAAATGAGTATGTAGCTATGAAA
ACAAAAGAAACATCAAATAATGTCCCAGCAATAATGTCATCTCTATGGAAGAAATTGGACCATACACTTT
CTCAGATCAGGAGCATGCAAAGTTCCCCAAGGTTTGCTGGCAGTCAGAGAGCCCGAACGAGAACTGGAAT
TGCAGAAATCAAACGGCAGAGAAAGCTTGCATCTCAAACAGCTCCAGCCAGTGCAGAGTTGCTCACTTTA
CCTTACCTTTCAGGACAGTTTACCACTCCTCCTTCCACAGGTACACAGGTTACTCGACCAAGTGGCCAAA
TTTCAGATCCATCGAGGTCATATTTTGTAGTGGTCAACCACTCACAGTCACAAGATACTGTAACCACTGG
AGAAGCTTTAAATGTCATTCCTGGTGCTCAGGAAAAGAAAGCACATGCCAGTTTAATGTCTCCCGGTAGA
CGCAAAAGTGAATCTCAGAGAAAAAGTACCACTTTGTCTGGCCCTCATTCAACAATACGGAATTTCCAAG
ATCCAAACGCTTTTGCAGTAGAAAAACAAATGGTTATTGAAAATGCACGAGAAAAAATACTAAGCAACAA
ATCTCTTCAAGAAAAGCTAGCAGAAAACATAAATAAATTTTTAACTAGTGATAACAATATTGCCCAAGTA
CCTAAGCAAACAGATAACAACCCTACGGAGCCAGAGACTTCAATTGATGAATTCCTAGGACTTCCGAGTG
AAATTCACATGTCTGAAGAAGCTATACAGGACATATTGGAACAGACAGAATCAGACCCAGCATTTCAGGC
ACTCTTTGATCTCTTTGACTATGGCAAAACAAAGAATAATAAAAATATATCACAAAGTATTTCCAGTCAA
CCTATGGAATCCAATCCCAGTATAGTCTTAGCAGATGAAACTAATCTAGCAGTTAAAGGTTCTTTTGAAA
CAGAAGAATCTGATGGTCAGTCTGGTCAGCCCGCTTTTTGTACATCCTATCAGAATGATGACCCATTAAA
TGCTTTGAAGAATAGCAACAACCATGATGTGCTTAGACAAGAAGACCAGGAAAATTTTTCCCAAATAAGT
ACCAGCATACAGAAAAAGGCCTTTAAAACAGCTGTACCCACTGAACAGAAGTGTGACATTGACATTACCT
TTGAGTCCGTGCCTAATTTGAATGACTTTAACCAAAGAGGGAATTCTAATGCTGAATGTAATCCACATTG
TGCTGAATTATACACCAATCAGATGTCCACTGAAACTGAAATGGCTATAGGGATTGAAAAGAACTCTTTG
TCTTCAAATGTACCGAGTGAATCTCAGTTACAGCCTGATCAGCCTGATATACCAATAACTTCATTTGTTT
CACTTGGTTGTGAAGCTAACAATGAAAACTTAATTCTCTCTGGGAAGAGTTCTCAACTTTTATCCCAAGA
TACTTCATTAACTGGAAAGCCATCTAAAAAAAGTCAATTTTGTGAAAATTCTAATGATACAGTAAAACTT
AAAATTAATTTTCATGGTTCCAAGTCATCAGATTCTAGTGAAGTTCACAAGAGTAAAATAGAAATTAATG
TGTTAGAACCAGTTATGTCACAGCTATCAAATTGCCAAGATAATTCTTGTCTTCAAAGTGAAATACTACC
TGTGTCTGTTGAAAGTTCACATTTAAATGTATCTGGACAAGTAGAAATTCATCTTGGAGATTCGCTGTCT
TCTACTAAACAACCATCTAATGATTCAGCATCTGTTGAGTTAAATCATACAGAAAATGAAGCTCAGGCAT
CCAAGTCTGAGAATTCACAGGAGCCTTCATCTTCTGTAAAAGAAGAGAATACTATTTTTCTCTCTTTAGG
TGGAAATGCTAACTGTGAGAAAGTTGCACTGACGCCTCCAGAAGGCACTCCTGTAGAAAACAGTCACTCT
CTTCCTCCAGAATCTGTGTGTTCTTCAGTGGGAGATTCTCACCCTGAGTCCCAAAATACTGATGATAAAC
CTTCTAGCAACAACTCAGCAGAGATAGATGCATCAAATATCGTCTCTCTCAAAGTTATCATTAGTGATGA
TCCATTTGTTTCCTCAGATACTGAACTTACCAGTGCTGTTTCTAGTATTAATGGAGAAAACCTGCCAACT
ATAATCTTGTCTTCTCCTACTAAATCACCTACTAAAAATGCAGAACTAGTTAAATGCCTATCTTCAGAAG
AAACTGTAGGTGCTGTTGTATATGCCGAAGTAGGGGATTCAGCCTCAATGGAACAGAGTCTTTTAACATT
CAAATCTGAAGACTCTGCAGTAAACAATACTCAGAATGAAGATGGCATTGCTTTTTCAGCTAATGTTACA
CCATGTGTTTCCAAGGATGGAGGATATATACAGTTGATGCCAGCCACAAGCACAGCTTTTGGCAATTCAA
ATAACATTCTGATAGCTACCTGTGTGACTGATCCAACAGCGTTAGGAACATCTGTAAGTCAGTCTAATGT
AGTGGTGTTGCCTGGAAATTCTGCACCTATGACTGCTCAACCTCTACCACCTCAGTTACAGACACCACCA
AGGTCAAACAGTGTATTTGCTGTCAACCAAGCTGTGTCACCAAACTTTTCACAAGGATCTGCCATAATAA
TTGCCTCTCCAGTCCAGCCTGTACTCCAAGGAATGGTAGGGATGATCCCAGTATCTGTGGTTGGACAGAA
TGGAAATAACTTTTCTACTCCTCCTCGGCAGGTTCTTCATATGCCTTTGACAGCACCTGTATGCAATAGA
AGTATCCCTCAATTCCCCGTCCCTCCAAAATCTCAGAAGGCTCAGGGACTAAGAAACAAGCCTTGTATAG
GAAAACAAGTAAATAATTTGGTGGATTCGTCAGGTCATTCAGTTGGATGTCATGCACAAAAAACTGAAGT
TTCTGACAAAAGTATTGCCACAGATCTTGGGAAAAAATCAGAAGAAACCACAGTTCCCTTCCCAGAAGAG
AGTATAGTTCCAGCTGCTAAACCATGCCACAGACGTGTACTCTGTTTCGACAGCACTACTGCTCCTGTGG
CAAATACGCAGGGGCCAAACCATAAGATGGTGTCCCAAAACAAAGAAAGGAATGCAGTCTCTTTTCCTAA
TCTTGACTCACCCAATGTGTCCTCCACCTTAAAACCCCCTTCTAATAATGCTATCAAAAGAGAGAAAGAG
AAGCCTCCTCTGCCTAAGATTTTATCTAAATCGGAAAGTGCCATTAGCCGGCATACCACCATAAGAGAAA
CTCAATCAGAAAAGAAAGTTTCACCAACAGAAATTGTGCTTGAATCTTTCCATAAAGCAACAGCTAATAA
GGAGAATGAATTATGCAGCGATGTAGAAAGACAGAAAAATCCAGAAAATTCAAAACTATCTATTGGGCAG
CAAAATGGGGGTTTGCGAAGTGAGAAATCTATAGCTTCACTGCAAGAAATGACCAAAAAACAAGGCACAT
CTTCAAACAATAAAAATGTACTTTCAGTAGGTACAGCTGTGAAGGATCTAAAACAAGAACAAACTAAATC
CGCCAGTTCTTTGATTACCACAGAAATGTTACAGGATATACAGAGGCACAGCTCAGTAAGTAGGCTTGCT
GATAGTAGTGATTTACCTGTGCCCCGGACACCTGGCTCAGGGGCAGGGGAAAAACATAAAGAAGAACCTA
TAGATATTATCAAGGCCCCCTCTAGTAGGCGTTTCAGTGAAGACAGTAGTACATCAAAAGTAATGGTCCC
TCCTGTCACCCCAGACTTGCCTGCCTGCAGCCCTGCCAGTGAAACAGGAAGTGAAAACAGTGTAAATATG
GCTGCCCACACATTAATGATTCTCTCCAGGGCAGCCATTTCTAGGACTACTTCAGCAACTCCTCTGAAAG
ATAACACACAACAGTTTAGAGCATCTTCAAGGAGCACCACAAAAAAGCGGAAAATTGAGGAATTAGATGA
ACGTGAGCGAAACTCTCGTCCTTCTAGTAAAAATCTTACAAATTCATCAATACCAATGAAAAAGAAGAAA
ATTAAGAAAAAGAAGCTTCCCAGTTCATTTCCAGCAGGAATGGATGTAGACAAATTTTTGTTATCATTGC
ATTATGATGAGTAA

Translation (1427 aa):
MLLPSDVARLVLGYLQQENLISTCQTFILESSDLKEYAEHCTDEGFIPACLLSLFGKNLTTILNEYVAMK
TKETSNNVPAIMSSLWKKLDHTLSQIRSMQSSPRFAGSQRARTRTGIAEIKRQRKLASQTAPASAELLTL
PYLSGQFTTPPSTGTQVTRPSGQISDPSRSYFVVVNHSQSQDTVTTGEALNVIPGAQEKKAHASLMSPGR
RKSESQRKSTTLSGPHSTIRNFQDPNAFAVEKQMVIENAREKILSNKSLQEKLAENINKFLTSDNNIAQV
PKQTDNNPTEPETSIDEFLGLPSEIHMSEEAIQDILEQTESDPAFQALFDLFDYGKTKNNKNISQSISSQ
PMESNPSIVLADETNLAVKGSFETEESDGQSGQPAFCTSYQNDDPLNALKNSNNHDVLRQEDQENFSQIS
TSIQKKAFKTAVPTEQKCDIDITFESVPNLNDFNQRGNSNAECNPHCAELYTNQMSTETEMAIGIEKNSL
SSNVPSESQLQPDQPDIPITSFVSLGCEANNENLILSGKSSQLLSQDTSLTGKPSKKSQFCENSNDTVKL
KINFHGSKSSDSSEVHKSKIEINVLEPVMSQLSNCQDNSCLQSEILPVSVESSHLNVSGQVEIHLGDSLS
STKQPSNDSASVELNHTENEAQASKSENSQEPSSSVKEENTIFLSLGGNANCEKVALTPPEGTPVENSHS
LPPESVCSSVGDSHPESQNTDDKPSSNNSAEIDASNIVSLKVIISDDPFVSSDTELTSAVSSINGENLPT
IILSSPTKSPTKNAELVKCLSSEETVGAVVYAEVGDSASMEQSLLTFKSEDSAVNNTQNEDGIAFSANVT
PCVSKDGGYIQLMPATSTAFGNSNNILIATCVTDPTALGTSVSQSNVVVLPGNSAPMTAQPLPPQLQTPP
RSNSVFAVNQAVSPNFSQGSAIIIASPVQPVLQGMVGMIPVSVVGQNGNNFSTPPRQVLHMPLTAPVCNR
SIPQFPVPPKSQKAQGLRNKPCIGKQVNNLVDSSGHSVGCHAQKTEVSDKSIATDLGKKSEETTVPFPEE
SIVPAAKPCHRRVLCFDSTTAPVANTQGPNHKMVSQNKERNAVSFPNLDSPNVSSTLKPPSNNAIKREKE
KPPLPKILSKSESAISRHTTIRETQSEKKVSPTEIVLESFHKATANKENELCSDVERQKNPENSKLSIGQ
QNGGLRSEKSIASLQEMTKKQGTSSNNKNVLSVGTAVKDLKQEQTKSASSLITTEMLQDIQRHSSVSRLA
DSSDLPVPRTPGSGAGEKHKEEPIDIIKAPSSRRFSEDSSTSKVMVPPVTPDLPACSPASETGSENSVNM
AAHTLMILSRAAISRTTSATPLKDNTQQFRASSRSTTKKRKIEELDERERNSRPSSKNLTNSSIPMKKKK
IKKKKLPSSFPAGMDVDKFLLSLHYDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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