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Report for CCDS41627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41627.1 Public Homo sapiens 11 SVIP 24 110 108 CCDS HistoryNCBI Gene:258010Re-query CCDS DB by CCDS ID:41627.1Re-query CCDS DB by GeneID:258010See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41627.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354193.5 ENSP00000346130.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354193.5Link to Ensembl Protein Viewer:ENSP00000346130.4Re-query CCDS DB by Nucleotide ID:ENST00000354193Re-query CCDS DB by Protein ID:ENSP00000346130
Original member Current member NCBI NM_148893.3 NP_683691.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_148893.3Link to Protein Sequence:NP_683691.1Re-query CCDS DB by Nucleotide ID:NM_148893Re-query CCDS DB by Protein ID:NP_683691Link to BLAST:NP_683691.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_683691.1 77 Q8NHG7 77 100% 0 0

Chromosomal Locations for CCDS 41627.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 22823119 22823133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22827207 22827320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22827824 22827874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 22829695 22829748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (234 nt):
ATGGGGCTGTGTTTTCCTTGTCCCGGGGAGTCCGCGCCTCCCACGCCGGACCTGGAAGAGAAAAGAGCAA
AGCTTGCAGAGGCTGCAGAGAGAAGACAAAAAGAGGCTGCATCTCGGGGAATTTTAGATGTTCAATCTGT
GCAAGAAAAGAGAAAGAAAAAGGAAAAAATAGAAAAACAAATTGCTACATCCGGGCCCCCACCAGAAGGT
GGACTTAGGTGGACAGTTTCATAA

Translation (77 aa):
MGLCFPCPGESAPPTPDLEEKRAKLAEAAERRQKEAASRGILDVQSVQEKRKKKEKIEKQIATSGPPPEG
GLRWTVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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