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Report for CCDS4162.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4162.1 Public Homo sapiens 5 GDF9 24 110 108 CCDS HistoryNCBI Gene:2661Re-query CCDS DB by CCDS ID:4162.1Re-query CCDS DB by GeneID:2661See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4162.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378673.2 ENSP00000367942.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000378673.2Link to Ensembl Protein Viewer:ENSP00000367942.2Re-query CCDS DB by Nucleotide ID:ENST00000378673Re-query CCDS DB by Protein ID:ENSP00000367942
Original member Current member EBI ENST00000464378.2 ENSP00000509893.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000464378.2Link to Ensembl Protein Viewer:ENSP00000509893.1Re-query CCDS DB by Nucleotide ID:ENST00000464378Re-query CCDS DB by Protein ID:ENSP00000509893
Original member Current member EBI ENST00000687138.1 ENSP00000510441.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000687138.1Link to Ensembl Protein Viewer:ENSP00000510441.1Re-query CCDS DB by Nucleotide ID:ENST00000687138Re-query CCDS DB by Protein ID:ENSP00000510441
Original member Current member NCBI NM_005260.7 NP_005251.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005260.7Link to Protein Sequence:NP_005251.1Re-query CCDS DB by Nucleotide ID:NM_005260Re-query CCDS DB by Protein ID:NP_005251Link to BLAST:NP_005251.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005251.1 454 O60383 454 100% 0 0

Chromosomal Locations for CCDS 4162.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 132861589 132862556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 132864137 132864533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1365 nt):
ATGGCACGTCCCAACAAATTCCTCCTTTGGTTTTGCTGCTTTGCCTGGCTGTGTTTTCCTATTAGCCTTG
GTTCTCAGGCTTCTGGGGGAGAAGCTCAGATTGCTGCTAGTGCTGAGTTGGAATCTGGGGCTATGCCTTG
GTCCTTGCTGCAGCATATAGATGAGAGAGACAGAGCTGGCCTCCTTCCCGCGCTTTTCAAAGTTCTATCT
GTTGGGCGAGGTGGGTCACCTAGGCTGCAGCCAGACTCCAGAGCTTTGCACTACATGAAGAAGCTCTATA
AGACATATGCTACCAAGGAAGGGATTCCTAAATCCAATAGAAGTCACCTCTACAACACTGTTCGGCTCTT
CACCCCCTGTACCCGGCACAAGCAGGCTCCTGGAGACCAGGTAACAGGAATCCTTCCATCAGTGGAACTG
CTATTTAACCTGGATCGCATTACTACCGTTGAACACTTACTCAAGTCAGTCTTGCTGTACAATATCAACA
ACTCAGTTTCTTTTTCCTCTGCTGTCAAATGTGTGTGCAATCTAATGATAAAGGAGCCAAAGTCTTCTAG
CAGGACTCTCGGCAGAGCTCCATACTCATTTACCTTTAACTCACAGTTTGAATTTGGAAAGAAACACAAA
TGGATTCAGATTGATGTGACCAGCCTCCTTCAACCTTTAGTGGCCTCCAACAAGAGAAGTATTCACATGT
CTATAAATTTTACTTGCATGAAAGACCAGCTGGAGCATCCTTCAGCACAGAATGGTTTGTTTAACATGAC
TCTGGTGTCCCCCTCACTGATCTTATATTTGAATGACACAAGTGCTCAGGCTTATCACAGCTGGTATTCC
CTTCACTATAAAAGGAGGCCTTCCCAGGGTCCTGACCAGGAGAGAAGTCTGTCTGCCTATCCTGTGGGAG
AAGAGGCTGCTGAGGATGGGAGATCTTCCCATCACCGTCACCGCAGAGGTCAGGAAACTGTCAGTTCTGA
ATTGAAGAAGCCCTTGGGCCCAGCTTCCTTCAATCTGAGTGAATACTTCAGACAATTTCTTCTTCCCCAA
AATGAGTGTGAGCTCCATGACTTTAGACTTAGCTTTAGTCAGCTGAAGTGGGACAACTGGATTGTGGCTC
CGCACAGGTACAACCCTCGATACTGTAAAGGGGACTGTCCAAGGGCAGTTGGACATCGGTATGGCTCTCC
AGTTCACACCATGGTACAGAACATCATCTATGAGAAGCTGGACTCCTCAGTGCCAAGACCGTCATGTGTA
CCTGCCAAATACAGCCCCTTGAGTGTTTTGACCATTGAGCCCGATGGCTCAATTGCCTATAAAGAGTACG
AAGATATGATAGCTACAAAGTGCACCTGTCGTTAA

Translation (454 aa):
MARPNKFLLWFCCFAWLCFPISLGSQASGGEAQIAASAELESGAMPWSLLQHIDERDRAGLLPALFKVLS
VGRGGSPRLQPDSRALHYMKKLYKTYATKEGIPKSNRSHLYNTVRLFTPCTRHKQAPGDQVTGILPSVEL
LFNLDRITTVEHLLKSVLLYNINNSVSFSSAVKCVCNLMIKEPKSSSRTLGRAPYSFTFNSQFEFGKKHK
WIQIDVTSLLQPLVASNKRSIHMSINFTCMKDQLEHPSAQNGLFNMTLVSPSLILYLNDTSAQAYHSWYS
LHYKRRPSQGPDQERSLSAYPVGEEAAEDGRSSHHRHRRGQETVSSELKKPLGPASFNLSEYFRQFLLPQ
NECELHDFRLSFSQLKWDNWIVAPHRYNPRYCKGDCPRAVGHRYGSPVHTMVQNIIYEKLDSSVPRPSCV
PAKYSPLSVLTIEPDGSIAYKEYEDMIATKCTCR


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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