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Report for CCDS41545.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41545.1 Public Homo sapiens 10 LDB3 24 110 108 CCDS HistoryNCBI Gene:11155Re-query CCDS DB by CCDS ID:41545.1Re-query CCDS DB by GeneID:11155See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41545.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263066.11 ENSP00000263066.7 MANE Plus Clinical Accepted alive Link to Ensembl Transcript Viewer:ENST00000263066.11Link to Ensembl Protein Viewer:ENSP00000263066.7Re-query CCDS DB by Nucleotide ID:ENST00000263066Re-query CCDS DB by Protein ID:ENSP00000263066
Original member Current member EBI ENST00000372066.8 ENSP00000361136.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000372066.8Link to Ensembl Protein Viewer:ENSP00000361136.3Re-query CCDS DB by Nucleotide ID:ENST00000372066Re-query CCDS DB by Protein ID:ENSP00000361136
Original member Current member NCBI NM_001080116.1 NP_001073585.1 Accepted alive Link to Nucleotide Sequence:NM_001080116.1Link to Protein Sequence:NP_001073585.1Re-query CCDS DB by Nucleotide ID:NM_001080116Re-query CCDS DB by Protein ID:NP_001073585Link to BLAST:NP_001073585.1
Original member Current member NCBI NM_001368067.1 NP_001354996.1 MANE Plus Clinical Accepted alive Link to Nucleotide Sequence:NM_001368067.1Link to Protein Sequence:NP_001354996.1Re-query CCDS DB by Nucleotide ID:NM_001368067Re-query CCDS DB by Protein ID:NP_001354996Link to BLAST:NP_001354996.1
Original member Current member NCBI NM_001368068.1 NP_001354997.1 Accepted alive Link to Nucleotide Sequence:NM_001368068.1Link to Protein Sequence:NP_001354997.1Re-query CCDS DB by Nucleotide ID:NM_001368068Re-query CCDS DB by Protein ID:NP_001354997Link to BLAST:NP_001354997.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001073585.1 283 O75112-6 283 100% 0 0
NP_001354996.1 283 O75112-6 283 100% 0 0
NP_001354997.1 283 O75112-6 283 100% 0 0

Chromosomal Locations for CCDS 41545.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 86668692 86668784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86679367 86679518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86680082 86680157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86685678 86685700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86687069 86687272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86691896 86692065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86692535 86692571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86699278 86699374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGTCTTACAGTGTGACCCTGACTGGGCCCGGGCCCTGGGGCTTCCGTCTGCAGGGGGGCAAGGACTTCA
ACATGCCCCTCACTATCTCCCGGATCACACCAGGCAGCAAGGCAGCCCAGTCCCAGCTCAGCCAGGGTGA
CCTCGTGGTGGCCATTGACGGCGTCAACACAGACACCATGACCCACCTGGAAGCCCAGAACAAGATCAAG
TCTGCCAGCTACAACTTGAGCCTCACCCTGCAGAAATCAAAGCGTCCCATTCCCATCTCCACGACAGCAC
CTCCAGTCCAGACCCCTCTGCCGGTGATCCCTCACCAGAAGGTGGTAGTCAACTCTCCAGCCAACGCCGA
CTACCAGGAACGCTTCAACCCCAGTGCCCTGAAGGACTCGGCCCTGTCCACCCACAAGCCCATCGAGGTG
AAGGGGCTGGGCGGCAAGGCCACCATCATCCATGCGCAGTACAACACGCCCATCAGCATGTATTCCCAGG
ATGCCATCATGGATGCCATCGCTGGGCAGGCCCAAGCCCAAGGCAGTGACTTCAGTGGGAGCCTCCCTAT
TAAGGACCTTGCCGTAGACAGCGCCTCTCCCGTCTACCAGGCTGTGATTAAGAGCCAGAACAAGCCAGAA
GATGAGGCTGACGAGTGGGCACGCCGTTCCTCCAACCTGCAGTCTCGCTCCTTCCGCATCCTGGCCCAGA
TGACGGGGACAGAATTCATGCAAGACCCTGATGAAGAAGCTCTGCGAAGGTCAAGGGAAAGGTTTGAAAC
GGAACGTAACAGCCCACGTTTTGCCAAATTGCGCAACTGGCACCATGGCCTTTCAGCCCAAATCCTTAAT
GTTAAAAGCTAA

Translation (283 aa):
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK
SASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVNSPANADYQERFNPSALKDSALSTHKPIEV
KGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDFSGSLPIKDLAVDSASPVYQAVIKSQNKPE
DEADEWARRSSNLQSRSFRILAQMTGTEFMQDPDEEALRRSRERFETERNSPRFAKLRNWHHGLSAQILN
VKS


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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