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Report for CCDS41410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41410.1 Public Homo sapiens 1 RUSC1 24 110 108 CCDS HistoryNCBI Gene:23623Re-query CCDS DB by CCDS ID:41410.1Re-query CCDS DB by GeneID:23623See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41410.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368352.10 ENSP00000357336.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000368352.10Link to Ensembl Protein Viewer:ENSP00000357336.5Re-query CCDS DB by Nucleotide ID:ENST00000368352Re-query CCDS DB by Protein ID:ENSP00000357336
Original member Current member NCBI NM_001105203.2 NP_001098673.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001105203.2Link to Protein Sequence:NP_001098673.1Re-query CCDS DB by Nucleotide ID:NM_001105203Re-query CCDS DB by Protein ID:NP_001098673Link to BLAST:NP_001098673.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001098673.1 902 Q9BVN2-1 902 100% 0 0

Chromosomal Locations for CCDS 41410.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 155321774 155323130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155324845 155324943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155325102 155325178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155325316 155325490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155325567 155325672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155325864 155325910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155326580 155327132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155328150 155328275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 155330403 155330571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2709 nt):
ATGCTGTCCCCTCAGAGAGCTTTACTCTGCAACCTCAACCACATCCACCTCCAGCACGTCTCCCTGGGCC
TGCACTTGTCCCGCCGTCCTGAGCTACAGGAGGGGCCTTTGAGCACACCCCCTCCTCCAGGAGACACTGG
GGGCAAGGAGAGCAGGGGCCCCTGCAGTGGCACCCTGGTGGACGCCAATTCCAACAGCCCAGCTGTGCCC
TGCCGGTGCTGCCAGGAGCACGGTCCGGGCCTAGAAAACCGGCAGGACCCGTCACAGGAGGAAGAGGGGG
CTGCCTCTCCCTCAGACCCAGGCTGCTCCTCCTCACTCAGCTCCTGCTCAGATCTTAGCCCCGATGAGTC
CCCTGTCTCAGTCTACTTGCGGGACCTCCCTGGTGATGAGGATGCCCACCCTCAGCCCAGTATCATCCCC
CTGGAGCAGGGCTCCCCACTGGCTTCAGCAGGCCCTGGCACCTGCTCACCGGACAGCTTCTGCTGCTCTC
CTGATTCCTGCTCCGGAGCTTCTTCTTCACCCGATCCTGGCCTGGACTCGAACTGCAACGCCCTGACCAC
CTGCCAGGACGTCCCTTCCCCAGGCTTGGAGGAAGAGGACGAGAGGGCGGAGCAGGATCTCCCTACCTCT
GAGCTCTTAGAGGCGGATGATGGGAAAATCGACGCTGGGAAAACGGAGCCCAGTTGGAAGATTAACCCAA
TTTGGAAAATTGACACAGAGAAAACTAAAGCTGAATGGAAAACCACTGAAAACAATAACACTGGTTGGAA
AAACAACGGGAATGTTAACTCTAGCTGGAAAAGTGAACCTGAAAAATTCGACTCTGGTTGGAAAACCAAC
ACAAGAATAACTGATTCTGGCTCGAAAACAGATGCAGGGAAAATTGATGGAGGATGGAGAAGTGACGTCA
GCGAGGAGCCGGTGCCCCACCGGACAATCACGTCCTTCCACGAGCTGGCCCAGAAGCGCAAGCGGGGCCC
AGGGCTGCCCCTTGTCCCGCAGGCGAAGAAAGATCGCAGTGACTGGCTCATAGTCTTCTCGCCCGACACC
GAGCTCCCCCCCTCGGGGTCGCCGGGCGGCTCCTCGGCACCTCCTCGGGAAGTCACCACCTTCAAGGAAC
TCCGGTCCCGAAGCCGGGCCCCAGCCCCGCCAGTCCCGCCTCGAGACCCCCCAGTTGGCTGGGCTTTGGT
CCCGCCCCGGCCCCCACCCCCGCCTGTCCCTCCCCGAAGGAAGAAGAACCGACCTGGACTGCAGCCCATA
GCGGAGGGGCAGTCCGAGGAGGGCCGGGCTGTCAGCCCAGCGGCTGGCGAGGAGGCCCCAGCCGCGAAGG
AGCCGGGCGCGCAGGCCGGCCTGGAGGTCCGTAGTTCGTGGTCCTTCGCCGGTGTCCCCGGAGCCCAGCG
GCTGTGGATGGCAGAAGCCCAGAGTGGGACTGGTCAGCTGCAGGAGCAGAAGAAAGGTCTTCTGATAGCC
GTCAGCGTCTCCGTTGATAAAATCATCTCGCATTTCGGGGCCGCCCGGAACTTGGTGCAGAAGGCCCAGT
TGGGTGATAGCCGGCTGAGCCCGGATGTGGGGCACCTGGTGCTGACCACCCTCTGCCCGGCCCTCCACGC
CCTGGTGGCGGACGGGCTGAAGCCTTTCCGGAAGGACCTCATCACCGGGCAGCGCAGGAGCAGCCCCTGG
AGCGTGGTGGAGGCGTCGGTGAAGCCAGGCTCCAGCACCCGCTCCCTTGGAACCCTGTATAGCCAGGTCA
GCCGTCTAGCCCCGCTGAGCAGCAGCCGTAGCCGCTTCCATGCCTTTATCCTGGGCCTCCTCAACACCAA
GCAGTTGGAGCTGTGGTTTTCCAGTCTCCAGGAAGATGCAGGCCTGCTCTCCCTCCTGTACCTGCCAACA
GGATTTTTCTCCCTGGCCCGCGGTGGTTGTCCCTCCCTGTCCACAGAGCTGCTGCTCCTGCTGCAGCCAT
TGTCGGTGCTCACTTTCCACCTGGACCTGCTCTTTGAGCACCACCACCACCTGCCCCTGGGCCCACCTCA
GGCCCCTGCCCCTCCAGGCCCACCTCCAGCTCTGCAGCAGACTATGCAAGCCATGCTGCACTTTGGGGGC
CGGCTGGCCCAGAGCCTTCGGGGGACTTCCAAGGAAGCTGCTTCAGACCCCTCTGACTCTCCAAACCTTC
CCACACCAGGGAGCTGGTGGGAGCAGTTGACCCAGGCCTCCCGGGTCTATGCCTCTGGGGGCACTGAGGG
CTTTCCTCTTTCCCGATGGGCACCGGGGCGTCATGGGACTGCAGCTGAAGAAGGTGCACAGGAGAGACCC
CTGCCCACAGATGAGATGGCACCAGGCAGGGGCCTCTGGTTGGGAAGACTATTTGGAGTGCCTGGGGGCC
CCGCAGAAAATGAGAATGGAGCCCTAAAGTCCAGGAGACCATCTAGCTGGCTGCCCCCGACAGTGAGTGT
GTTGGCTCTTGTGAAGCGGGGGGCACCTCCCGAGATGCCTTCTCCTCAGGAGCTTGAGGCCTCAGCACCC
AGGATGGTGCAAACCCATAGGGCAGTGCGGGCTCTCTGTGATCACACTGCTGCAAGACCTGACCAGTTGA
GCTTCCGGCGTGGGGAAGTGCTGCGTGTCATCACCACAGTGGATGAGGACTGGCTCCGCTGTGGGCGGGA
TGGCATGGAGGGTCTGGTGCCTGTGGGGTATACCTCCCTTGTTCTGTAG

Translation (902 aa):
MLSPQRALLCNLNHIHLQHVSLGLHLSRRPELQEGPLSTPPPPGDTGGKESRGPCSGTLVDANSNSPAVP
CRCCQEHGPGLENRQDPSQEEEGAASPSDPGCSSSLSSCSDLSPDESPVSVYLRDLPGDEDAHPQPSIIP
LEQGSPLASAGPGTCSPDSFCCSPDSCSGASSSPDPGLDSNCNALTTCQDVPSPGLEEEDERAEQDLPTS
ELLEADDGKIDAGKTEPSWKINPIWKIDTEKTKAEWKTTENNNTGWKNNGNVNSSWKSEPEKFDSGWKTN
TRITDSGSKTDAGKIDGGWRSDVSEEPVPHRTITSFHELAQKRKRGPGLPLVPQAKKDRSDWLIVFSPDT
ELPPSGSPGGSSAPPREVTTFKELRSRSRAPAPPVPPRDPPVGWALVPPRPPPPPVPPRRKKNRPGLQPI
AEGQSEEGRAVSPAAGEEAPAAKEPGAQAGLEVRSSWSFAGVPGAQRLWMAEAQSGTGQLQEQKKGLLIA
VSVSVDKIISHFGAARNLVQKAQLGDSRLSPDVGHLVLTTLCPALHALVADGLKPFRKDLITGQRRSSPW
SVVEASVKPGSSTRSLGTLYSQVSRLAPLSSSRSRFHAFILGLLNTKQLELWFSSLQEDAGLLSLLYLPT
GFFSLARGGCPSLSTELLLLLQPLSVLTFHLDLLFEHHHHLPLGPPQAPAPPGPPPALQQTMQAMLHFGG
RLAQSLRGTSKEAASDPSDSPNLPTPGSWWEQLTQASRVYASGGTEGFPLSRWAPGRHGTAAEEGAQERP
LPTDEMAPGRGLWLGRLFGVPGGPAENENGALKSRRPSSWLPPTVSVLALVKRGAPPEMPSPQELEASAP
RMVQTHRAVRALCDHTAARPDQLSFRRGEVLRVITTVDEDWLRCGRDGMEGLVPVGYTSLVL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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