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Report for CCDS41395.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
41395.1 Public Homo sapiens 1 TDRKH 24 110 108 CCDS HistoryNCBI Gene:11022Re-query CCDS DB by CCDS ID:41395.1Re-query CCDS DB by GeneID:11022See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 41395.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000368825.7 ENSP00000357817.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000368825.7Link to Ensembl Protein Viewer:ENSP00000357817.3Re-query CCDS DB by Nucleotide ID:ENST00000368825Re-query CCDS DB by Protein ID:ENSP00000357817
Original member Current member NCBI NM_001083964.1 NP_001077433.1 Accepted alive Link to Nucleotide Sequence:NM_001083964.1Link to Protein Sequence:NP_001077433.1Re-query CCDS DB by Nucleotide ID:NM_001083964Re-query CCDS DB by Protein ID:NP_001077433Link to BLAST:NP_001077433.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077433.1 516 Q9Y2W6-3 516 100% 0 0

Chromosomal Locations for CCDS 41395.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 151774452 151774504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151774710 151774806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151775065 151775166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151775392 151775543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151775820 151775884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151776096 151776268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151776439 151776599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151778685 151779006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151779103 151779207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151780051 151780140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151781481 151781587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 151782899 151783022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1551 nt):
ATGTCTACTGAACGGACTTCTTGGACAAGCCTGTCCACCATTCAGAAAATAGCCCTGGGCCTTGGGATCC
CAGCCAGTGCAACAGTTGCCTATATCCTATACCGCAGGTATAGGGAAAGCAGAGAAGAGCGGCTGACATT
TGTTGGGGAAGATGACATTGAGATAGAGATGCGGGTTCCCCAGGAGGCTGTGAAACTCATCATTGGCCGG
CAAGGAGCCAATATTAAACAGCTGCGGAAACAGACAGGTGCTCGGATTGATGTGGACACAGAGGATGTAG
GCGATGAGCGAGTGCTGCTTATCAGTGGTTTTCCTGTTCAGGCATCTGGAGCCAAAATTACCTGTGACAA
AGAATCAGAAGGGACATTACTACTATCAAGACTTATAAAAATCTCAGGAACACAGAAGGAAGTGGCAGCA
GCCAAGCATTTGATACTGGAGAAAGTTTCAGAAGATGAAGAACTTCGGAAGAGAATTGCTCATTCTGCAG
AAACCAGGGTCCCACGCAAACAGCCAATCAGTGTGAGAAGAGAAGACATGACAGAGCCAGGTGGAGCTGG
AGAGCCAGCATTATGGAAAAACACCAGTTCTAGCATGGAGCCGACTGCACCCCTGGTGACTCCTCCACCC
AAAGGAGGAGGCGACATGGCTGTGGTAGTGTCAAAGGAAGGTTCCTGGGAGAAACCTAGTGATGACAGCT
TTCAGAAGTCTGAAGCCCAGGCCATCCCAGAGATGCCCATGTTTGAAATCCCCAGTCCTGACTTCAGTTT
TCATGCTGATGAGTACCTAGAAGTCTACGTTTCTGCTTCTGAGCACCCTAACCACTTCTGGATCCAGATC
GTTGGCTCCCGCAGCCTGCAATTGGATAAGCTTGTCAATGAGATGACCCAGCACTATGAGAATAGTGTGC
CTGAAGACTTGACTGTGCATGTAGGAGACATTGTAGCAGCACCTTTACCTACAAATGGTTCCTGGTATCG
AGCCCGGGTCCTCGGCACCTTGGAGAATGGGAACTTGGACCTCTATTTTGTTGACTTTGGAGATAATGGA
GATTGCCCACTGAAGGACCTCAGGGCTCTCAGGAGTGACTTCCTAAGCCTTCCATTTCAAGCAATAGAAT
GTAGTCTGGCACGGATTGCTCCCTCAGGTGACCAGTGGGAAGAGGAAGCTTTGGATGAGTTTGATAGACT
CACTCATTGTGCTGACTGGAAGCCTCTGGTAGCCAAGATCTCTAGCTATGTCCAGACTGGGATCTCAACT
TGGCCAAAGATCTACTTATATGATACTAGCAATGGGAAGAAACTTGATATTGGGCTAGAATTAGTACACA
AAGGATACGCAATTGAGCTTCCTGAAGACATAGAAGAAAACAGAGCTGTCCCAGACATGTTGAAGGACAT
GGCCACAGAAACAGATGCCTCTCTCAGCACGTTGCTCACTGAGACCAAAAAGAGCTCTGGAGAGATAACA
CATACCCTGTCCTGCCTCAGCTTATCAGAAGCTGCTTCCATGTCTGGTGATGATAACCTTGAAGATGACT
ACTTACTCTGA

Translation (516 aa):
MSTERTSWTSLSTIQKIALGLGIPASATVAYILYRRYRESREERLTFVGEDDIEIEMRVPQEAVKLIIGR
QGANIKQLRKQTGARIDVDTEDVGDERVLLISGFPVQASGAKITCDKESEGTLLLSRLIKISGTQKEVAA
AKHLILEKVSEDEELRKRIAHSAETRVPRKQPISVRREDMTEPGGAGEPALWKNTSSSMEPTAPLVTPPP
KGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPEMPMFEIPSPDFSFHADEYLEVYVSASEHPNHFWIQI
VGSRSLQLDKLVNEMTQHYENSVPEDLTVHVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNG
DCPLKDLRALRSDFLSLPFQAIECSLARIAPSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGIST
WPKIYLYDTSNGKKLDIGLELVHKGYAIELPEDIEENRAVPDMLKDMATETDASLSTLLTETKKSSGEIT
HTLSCLSLSEAASMSGDDNLEDDYLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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